© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0022900.1
GACAAAACCAATATTCAACCACCTGAGTACTTAACTCGATCCCTTAAACTTCCGACGACGACAAGTTGTTTAACTTTAATTAGGTATAACCTAAATGAGGTGAAGCAAAAAAAAAAAAGATGACAGGTTCAACTTCCTAAATGATTCTGTTTGATCAGGAAAAAAGAAAAGGTGATTCAGGTCCCCTGCTGCTCATCATCGCTAAGCATCTCCGCAGCAGCGAGTATCATGTCCACCATTTCATATCTCATGCCTTGCAGCCCAGGATCATCCTTCCTATGGAGTTTCAGCATCCTTTTCTCATGCCGCGCCATCCCCTCCTTTGCTCTCTCTATCGCACATGATGAGCAGTACCATTTCCCCTTGGGTATTGAAGTTCGACGGGGTGTTATGCAGTAGAGATGATAAGCTTCATCACAGCCGTCACACAGAATGGTCAGGTCATCATCTCTGTCAGAATGGCAAACTCGGCAAAGGCACGATGGGCAGTACCAGCAGGGCTTGTCCAGCTGCTTGTCACTAGCGATCTGTGTAGCCTTCAGGCAAGAAATGTGGTAGTACTTATATAGACAATGGGTGTGACCACATACCAAGAATCTCTTGTCCTTCTCCTCGGGATTTCCACACATCTTGCATAAGCCCCTGACATCAATATCTGACAATTCCACATCCTCAACAGGCTCTGCACTGGGAATCACAATTGCTCTGGAGTTATCAGCAGGTGCCCTTTCACTGGCAGTTTCCTCACACCTTGGAGGCCTGCAAAACTCAAGGTCCTTGCATGCGACGCAATGTCCGTGCAAACGATTTGGTTCATAATGGACCAAGGCCATGCCAACTTCAGCTGATTCGTTACAGATGGTGCTGCAGGTTTTACAACACCAGCTTCCAGTTGAAGTGGATGGCACAGGAGGTTCAATGCATGAGACGTGGAATGCTAGCATGCATCTCTTGCATGTGAGGATGCTATCAATTTTCGCTACCTTGCCACATTCATTGCAGTTAGTACCGTTTTGTTCATCGCAAACATCCATTGGATCTGGTTGATCCAACTGGTTGAAGCCTTGTGAGGTTGAAAGTACCAATGCATTTGACTTGACCATGTTCATGGGTTCCAAATTGGTCGCCGCAGCTCCCTTCAGATTCTCTTCACTATCATCTGATCCCCTCTCTCTTTCAACCTGCTTTGTGTAGGACGTTTCTGTGAGGCTTGAAAGATTATTTGCTAGGTCAATGATATCTTGACCAGCCATTTTAAGATCTTCCCATAACATTTTCAAATCATGTTTGAATAATAATGGTGCACGGCCATAATCTCCATTTTTCATCCTTGAGTCAATCATGGTAAAATCAAAATACTTAGTCCTTTGCTCATCTTGATGGACAGTTCTGCCAAGCACATTGCACAATAAGGCAAAATTCTCTGACTTTAAAACATCCACAAGAACACTCTGACACTTAGCAATATTCCCATCACTTGACACTTTTCTGTTGGAATCCATTTCCACTTTGTCCCCAACAGTTCCAAATTCAGCAGAACCGTAAAGAAGTACATCACGGATGCAACTCTGAATGCCAGGACCCTCTAGTGCACCTGGCAAATGCATCAGTCCATCTAAAACATATCGCCAGTGACTCCAACAGTCATATCTTTCAGTTTGCTTCTCAGATTTGTTTTTGCTACTATATAATCCATTTTCTTGAAGTCCCTGATAATTGTTGCTGTTCTGTGGAGGATGAGTGGTATTGCATACTGTGTTCAATGTGTTTGATTGTCTTTCAGCTTGATTAAAATCTTCAGAAGAACCTTTTCCCTGCATTACCTCAGCAAAATTCTCTTGATCAAACTGTAAACTCTCAGAAGAGCATGGCATGTTGCAACTGTCAATAACATCAAGATTCAATCTTCCTTCTTTCTGCTTCTCTCTTGATATCATTTTATCCCGAATAGTTTTAGCAACATCTTCTGGAACATTTAGGCATTGAGGACGATTCTGCCACCCAACAAGATGCCACTTCAATCTAGTTATGCCATGATAACCCTCTAAACTGCACCACTTGCACTTCCAATGGCCCTTCTCTTTGTCATGAATAAGCGAATGTTCCCATGCATTGTCCCTCAATCTTGTTGGGTAATTGGAAAGTACCGGATTGTTGTTCTGCTGTTGCTGACTCGATTGCCCAAGAATATGTGGCCTTGAACGAGCTTGTTGCCCAGCCTTTTTCACATTGAGCCTTCTCTTTAAGTGAATATGATGCCGTGCCTTTGCAAAAACTTCTTTTGGAACACTTGGGCACTTAGGATGTCGAAACACAGCAGCAAGATGAAAATGGAGCCTAGACGTTTTGCCATACCCATCCAAACCACAATATCTACACCTCCAATGCCTTGCAGATTCATCAACGATAACTATATGCTTCCTTATGTTAAACCTAGTTTTTTTAGGGTGTTTCAAGACCTCTTTGTGTTCCGGATTATCAGTTTTATTGTCCATAGTCTGCTGCTTATTATTGTCAAGTACTTGGCACCTTCCATGTTCCAAGGTGCAGTGCTCCTCAGGTTGATCGCTGCTTTTCATCAGCTGTTCACCATGGTTAAGTAGTTGGTTGCTATGTTCTGCACCCTGTTGGTTGCTTCCAGCTGCCACCTTTTCAAACTCATTAATGGTGCACTCTGATGTTTGTATATGCAAGGAATTTCCTAAAGGTTGTCGATCATCTGTCAATGGTGGAGTACCTTCCACCTGTATTTCTGAGAGATTAACTGCATCCTCGTCAAATTTGACATTGAAAGGAGATTTTGCAGCGCTATTAAAAAGATGGCGTGCTGCCCTTTTCTCTTCAATAAAGTTCAACACTTTTTTTGATATTTCCTTAGGAATATTTGGGCAACTACTATCAGTAAGATGAGCCTTCAATGTAGTTACACCACCACTTCGACATAAAGAACACCACTTGCACTTCCATCGTCTTTTATTTCCATCAAGATCCACTGCATGCTCCCACCCAATATCTCTTATCCCTCGTAACAACATGGTAGCCTTGGGATAAGTAAGATCCTGATTATCATGGTTCGTTTGGTTAGTAACTTCTTCAAGAACAGTGTCTACTCCAGTCAGCACCTCTGAATCAACGGGTAAAGGATCTTTGCCAGACTTGATATCATCAGAGGTGCTCTTAGCCGTCACACAGTTATCACGATTTTGTGCAGCTCGCTTCTTTCGCCTTTCTCTTTTCTTCCGCAAATGCTCCCTTATTTTTTCAGAGACGTCAGCTGGAACTTTTGGGCACATTTTGACATCCAGATCACCAGCAAGATGCCGCTTAAGTCTAGAGACACCACCACCATATCTAGTCAGGTGACAATACATGCACTTCCAGTGTTGTCTGTTCTCGTCGATCATTATGCCATGCTTCCATCCAATGTCCCTACTTTTCCAAAATGTTTCAGTCACCTGCCGTGCCAGAACATCTGCAGCCTTGGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTTGCTGTGGTTCCGGCTCTGACTGCGGCTGCGGCTGCGGTTGCTGTTGCGGCTCCGGCCGTGGCTGCCGGCGCCTCTTGTAGGTTCGGAAAGCTTCCTGGGGAGAGGAATCCCTGAAATGCACCTTCCCATTCCCTTTATCCTTGTCAACACCATCCATCTTCCACAGCCAGGGTTTCGGCCAAGAAACCGAAGATTGATTGCCCCGGAGGCCGATTCGGGGAGTAATGGCGGATGGAGTCGGAATTCTAGCACAAGTAGACGGCGCGAGGTGGGGGGAGGCGAAACGAAAACCTGCAGGAGAAGGGGAGGAGAGGAGAGGCTGTATGGGATACAGAAGAGAGGAGAGGAAGGGAGTAGTCTGACAAAAATCCGGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0022900.1 | 1 | 20352015 | C | T |
| Osa01LNT0022900.1 | 1 | 20352793 | T | A |
| Osa01LNT0022900.1 | 1 | 20354320 | T | C |
| Osa01LNT0022900.1 | 1 | 20354686 | G | A |
| Osa01LNT0022900.1 | 1 | 20355460 | T | C |
| Osa01LNT0022900.1 | 1 | 20357263 | A | G |
| Osa01LNT0022900.1 | 1 | 20357572 | C | T |
| Osa01LNT0022900.1 | 1 | 20357611 | A | G |
| Osa01LNT0022900.1 | 1 | 20357872 | C | T |
| Osa01LNT0022900.1 | 1 | 20358202 | A | T |
| Osa01LNT0022900.1 | 1 | 20361153 | T | C |
| Osa01LNT0022900.1 | 1 | 20361773 | A | G |
| Osa01LNT0022900.1 | 1 | 20363113 | T | C |
| Osa01LNT0022900.1 | 1 | 20363159 | T | A |
| Osa01LNT0022900.1 | 1 | 20361081 | C | T |
| Osa01LNT0022900.1 | 1 | 20361449 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0022900.1 | osa-miR5541 | Cleavage | 4.5 | 11.881 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR5541 | Cleavage | 5.0 | 9.233 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR6251 | Translation | 4.5 | 8.222 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR6254 | Translation | 5.0 | 23.022 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR160a-3p | Translation | 4.5 | 21.378 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR160b-3p | Translation | 4.5 | 21.378 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395b | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395d | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395e | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395g | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395h | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395i | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395j | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395k | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395l | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395s | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395c | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395a | Cleavage | 4.0 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR160e-3p | Cleavage | 4.0 | 21.378 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR167d-5p | Translation | 5.0 | 24.153 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR167e-5p | Translation | 5.0 | 24.153 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR167f | Translation | 5.0 | 24.153 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR167g | Translation | 5.0 | 24.153 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR167h-5p | Translation | 5.0 | 24.153 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR167i-5p | Translation | 5.0 | 24.153 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR172c | Cleavage | 3.5 | 11.335 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR167j | Translation | 5.0 | 24.153 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR437 | Cleavage | 2.5 | 9.742 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395m | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395n | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395p | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395q | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395v | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395r | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR810b.2 | Translation | 5.0 | 8.694 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR1850.1 | Translation | 3.5 | 5.998 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR1850.1 | Translation | 4.0 | 10.294 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR1850.1 | Cleavage | 5.0 | 22.275 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR1879 | Cleavage | 4.0 | 9.565 | 1 | 24 |
| Osa01LNT0022900.1 | osa-miR812g | Translation | 5.0 | 10.705 | 1 | 24 |
| Osa01LNT0022900.1 | osa-miR812h | Translation | 5.0 | 10.705 | 1 | 24 |
| Osa01LNT0022900.1 | osa-miR812i | Translation | 5.0 | 10.705 | 1 | 24 |
| Osa01LNT0022900.1 | osa-miR812j | Translation | 5.0 | 10.705 | 1 | 24 |
| Osa01LNT0022900.1 | osa-miR2864.2 | Translation | 4.5 | 13.456 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR2867-5p | Translation | 4.0 | 19.869 | 1 | 22 |
| Osa01LNT0022900.1 | osa-miR2863b | Cleavage | 4.5 | 16.203 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR395y | Cleavage | 4.5 | 17.21 | 1 | 21 |
| Osa01LNT0022900.1 | osa-miR5507 | Cleavage | 3.5 | 9.848 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0022900.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0022900.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0022900.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0022900.1 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0022900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0022900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0022900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0022900.1 | 1 | qNVB-1-1 | Morphological trait | Culm/leaf | R2159 | C178 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)