>Osa04LNT0251700.2

TAAAATGAGATATGATTAATATTAAAGAAAAGAATGATATCACGAGTTATTACATTATTAATTACATAGCCACATGGCTAAAAATAACATCCCAAATTTTCCATCTTTCGAAACCATGCAAAAGGGCAAATCCATATTTCTTTCTCACCTATGGTATAGAGACACTGGACAGCTTCGACAATCAACCCAACACTTTTTGGTTGGTACCCCCGTGCCAAAAAGGTCATCATCTCTCTGGTGCTTATGTCATGTGATTTTATTGTGCCCAAGGATCGACATCTAACTTGCTGCATGCTGAAGGATAGAAGCACTGAAGCAGCTCGTCGACCCATGACAGGCTCGCTGTGCTGGACATTCTGTAAATCTCATCTACTGGAGGAAGCTCTCTCTTATTTATACATCAATGGGTACATGTGCTTCTCAATTTTGTGCAAATGTACTTAAAAAATGGTCATGGTCAGGTCCGCGACTCCTTGCCTTGCTATAACAAATTAAATCGACCAATAAGAATACCTGCTGTTGACGTGCTCTTATTGCAGAACTCTTGGAAATCAATGGATTCAGTAGGATAATTTTATCCGCCGATGCAACTGGAGAGAAGGTGACACAGCTTCAGCTCCCCGTCCACCTTGTCCCTTGTATGTAGGAGACAACTAAACGAATCAGTATAGATATCACACATATATAGAAGTGAAAATCACAAAGCAGTTTCCAAAATAGTATATCCACAGTGCTCATTGATAACATATAGAACACAACATAGGATGTGTGGCAATGTGCCATGTTTCGGAAGACCCATAGAATAATTAACCATGATATAGAACATAATGAATCTAAACCCCGGAAACTGATCACAGATGCATGACAATATTAAAAATATAAAGGACCAAAATAAATCTGATGGTCTCCACTTCACCTCTTCAATTCACAACTCACAACTACTTATCATTCATGCCCGTACCTTAATTTCTCAGTAGTATAAACTATTCAAGTACAGTTCACTAATTAGAACTCAAAACAAATGAATCCGTCATGCAATATTAACAGTTTGGAATATTGTGAGGGAAAAAAGTATGAGCCAAGAATTGCTATTGTTGCAAACCTCAGACGTTTAGCAAAAAGCAAACATAACCATTGCACCCATCCTAATCATTCTCTGTTTCTTCCACTGAAACAGACAGCCTTTATACTGGCATACCTTTTGTGTCATAATGGAAATTCAGAAAAGCAAAATCCAATTATAGAAGTTATATCATGTAGATAGTGCAATTAAGCATTTATTTCATTTATAATGGCCATGATCAAGGGATAATTCATCAGCTGAACGAAATTCTCCATTTCTGAAATAACCACGGGACAAGGTTTCCAATACTCACCTTGGAGAGAGCAGAGAGCAGGATGAGACTGATGGAGAGTGGTGGTGATGGGGAAGATCTAATTTTGATTTGGAATAAATTTAGCACAGTATCGACAATTAGAGTTCGGTTCTTCAGTAGTTTAGCTCGAAGGTCTGAGAATCACCGTACTTCAAGAATTAGTTGCAGATCAAACACTCTCCTATCGGTGGCGGATGGGATTTGGTTGGCGGCGCCGGCGCTTGATGCGTAGGAGGTGACAGCACGTTGGTGGAGGAGGCAGCGGCATGACCGGCTTGGCGACGACGAGCCCGGCGACTCCGGCCAATGGTGAACTGGTGACGCAGAGGCGGGCGGCCAGGCGGAGATCGGTGGCAGCGAAGTTGTGGGTGTTCCGGCGGCGCCGATCGGTGGCGGATCGGTGCGATGGGCGGGAGGGTGGCGCGGATGAGATCGTCGTTGGTGGGCGGAGGCGCAGCGGGCGGCGCCCCGGGGGGGAGGGGGGTGCTGCCGACAGAGGGCGGGGAAACGGGATCGCGGGCTCGCGGCGGTTCCTCGGATGGGAGAGGAGGGGGCGTAGAGGCGCGATCTGTGGAGGCTGATCCGGGAGTGGCGTGGGGGAGAGACGCGATCAGGATGAGGCAGT

Explanation	CPC Score
noncoding	-1.22695

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0251700.2	osa-miR5079b	Cleavage	3.5	11.45	1	22
Osa04LNT0251700.2	osa-miR167c-3p	Cleavage	3.5	23.266	1	23
Osa04LNT0251700.2	osa-miR167h-3p	Cleavage	5.0	24.578	1	21
Osa04LNT0251700.2	osa-miR414	Cleavage	4.0	22.381	1	21
Osa04LNT0251700.2	osa-miR444b.2	Cleavage	5.0	13.708	1	21
Osa04LNT0251700.2	osa-miR444c.2	Cleavage	5.0	13.708	1	21
Osa04LNT0251700.2	osa-miR444f	Cleavage	5.0	13.708	1	21
Osa04LNT0251700.2	osa-miR1850.1	Cleavage	4.5	11.638	1	21
Osa04LNT0251700.2	osa-miR2099-5p	Cleavage	5.0	17.686	1	22
Osa04LNT0251700.2	osa-miR5079a	Cleavage	3.5	11.45	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0251700.2	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0251700.2	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0251700.2	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0251700.2	4	nan	Morphological trait	Root	RM261	RZ69
Osa04LNT0251700.2	4	nan	Morphological trait	Root	RM261	RZ69
Osa04LNT0251700.2	4	An8-glum	Morphological trait	Panicle/flower	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus