© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0252000.1
GTACATAACCGTTATACACCTTAATAGAAACCATTAGTTCTTGAAAACACACAAGAAAGCCATGCTCATCATTAATTTACTACATCCGACATAAGCAAGCAGTTCAATAACACAGGAAGTGTATAGTTTATTTTTCAGCTGGTTAGACTGAGTTCTGGCAGATTCAGGCTGAGAAGATCATTATCCTCAATCAGTTGCTCTCAGTTGCATCCAGGCTCCATAGTGTCCTTAGGAATCACAACCAAGAACGTAGCCCTGTAGGTTGGCCTCCTGCAGGTTGGGCTGCAGTGGCTGAAGCTTTGTACTACTCATGAAGCTGAGGTGAAAGCTGCAGTGCTGTCATGGAAGACTCGGCATCCTGACAGTACATCTGGCTGCTGCACACATCCCACAATGGAAATGGCTTTGGATTGACCATCGAAGCTGCCTGGGTCTGCTCACCAATCAGGTTCTTTTGACAAGCACAAACAAGTTACTCGATAGAGAATCCGTGACATAATTTCACTTGAGGATAAATCCTTGTGCCGAGTTGGAATTGGCACAGATAATTGCTCGTCTCCTGGAATTGGCATCTCCCGGTTGCACATCTCAAGAAGCTGCTGATAACGTAGCTGTTGCTTCCTTAGACGAACTTTGTACAGAGAGAACTCAATCTTCTGCTCAAAATTACTCAAATCTGCGGAGATCTCGAGGAATCCTATATGTGGATGTATCAATTTCCAAAATCTCAAGCGGAAGATGAATAGTCTAGCTTTTAAGCTGAGAAGTTTCAACTTTCGACGCTTCTGGCAGTTCCAGATTGCATCTAAGCTTCTTTTCAAGCTTTTTTTGTTATCTCACTGGCCGCAAGCTCCTTTTTCTTCTCATAATCCTTCTTAGACAGACCCTCTCAATCTTCTATCCCTGCAGTTGTAAAAATATGAAGTATACAATGTTCTTCAGGATACTTACAAATATGCTTCCACAAGGCTTCTCCAAATTAGCTCAGTCATCCATCCTAAATGAAAGGGGCAAGCTTCCCAATGAACAGTAGACACCAGACAGCTTCTCTGATATTTTCCTTGCACAAATCAACAGAAGCATTGTTAACCTTCGGAGCATAGCCACACACCTTTATTTTGCAGTTATCTCATCAAGCTTCAGAAGGATCCTTTCATTTCCAAAATTTTTTCACCTCCAACTGCAAACTGATGAACACTGCCATTCAGCTCCATCCAACTGCAACCTTTCTTCTTCCACGTCCCCTGGACTTCCATTACTCCCCTTACCTCCTTAACATCATTCCAGTTTCCATATTCTGCATATATATTTGATAAGAGCACTTGTGCTCCACCATGATTAGGGTCCAACTCCAAAATTTTCTTTGCAGCAAACGTGCCGAGCTCAAGATCACCATGCATCCGGCATGCTGCTAACAAAGATCCCCAAATGACCACATTTGGTCTTAAGTGCATGGACTGTATCAGGTCAGCAGCTTGTCCAAGAAGTTTTGCTCTTCCCAAAAGATCCACCATACAACCGTAGTGCTCATGCATGGGCTCAATCCTGTATTGCTGGACCATAATTTTGAACAATAAACGGCCTTCTTCAACTAAACCAGCATGACAGCAAGCATAGAGCAACCCAAGAAATGTCACTCCATTGGGTTGAATCCCTTCACTTTTCATGTTCTCAAAAAGGGTTAAGGCGGATCTTCCATCACCATGCATAGCAGATGCAGTAATTATGCTTGTCCAGGTGACAACATTCTTTTGAGGCATTGCATTGAAGACATCCAAGGCAAGAGTTAAACTCCCACATTTGGAGAACATATCAATAAGAGCATTTCCGATGGGTAATATCTTACACATGCTATGATTCTCCACGAAGGAATGGATACATCTAGCTTTTTCAAGGGCACCAACATTAGCACATGCAGATATTACACTCAGCATGGTAATTTCATCAGGTTTGACACCACTCCGTTGCATATCATGGAACAAATTCAGCGCTTCCATAGGTTTGCTGCTTTCAGCATATCCTGCTATCATAGCACTCCAAGATACCACGTCCTTCGCTGGCATTCCATTGAATATGGAGTGAGCAATCTCAACTTTTCCATTCTTGGCGTATCCATACACCATGGTGGTTGATAATACAATTTCCTTTTCTGACACCCTATTGTACAGCTTTTCAGCCATTTCCATGTCTGCACAACTAGCATACATGTTCATGAGAGCACAGCTGACTTGAGCATCAATAAGAGTATCTGACACCAACATGTATGAGTGGATAGCCTTTCCAAATCTCAAGTTTCTTGTATGAGCACAAGTTGAAAGGACAGTAGCAATAATCACTTGATCAGGAACAACTCTTGATCTCTTCATGCTATGAAAAAGCAACAGGGCTTCTTCATAGTTTCGGGCCTGACAATAAAATGTAGAGGACAACTTTCCGATGCTTGTTCAACATATCATTGGAAGAAGGATCCAGATTGGCCTGATCCCGAGTTTCATTTTGAGTCTTTTTCTTTGCGGCAACTGTTTCAAAATAAACACTTCAAATCAATAGCAGGACCTTCTTTCTTTTCATATTTCAGACCTGAGACAAACAGTGAGAGCCTGAACCAACGAGACACCGAAACAGACAGACAGTGAGGGCGCTAGGCGCAAGCCTGTGGCACCACCGACGCACCGCCGCTCGCCGCCCGCCCACACTGGGGCTGGTGGTTGCTGGCCCAGCCACAGCCAGGTGCCCAGGCCTGGCCACGCGGGTGACGCTCGCCCAGGGGCGGCCCCAGGATTTTCAGGTTGGGTATGCGAAACGTGAAGGAGTAATTATATAGTACTAAACTACAAATTGTATAACATGAATTGGGTATAATTTCATATATTTATATAATTGATTTAACTACTAATTGCCAATTGTTCAACAAATAGAAATTACTCAACTAGTATTTGATAATTGTTCAACACATAAGAGTGGCAATATGTGAAATATATAGAGGATTGAAAATTGTGCAGTGTTTGAGGCAGGGGACTCATGAATTGCTGATTTAGAATTCATGAACAATTGTTCAAGAGCAAGACCATTCTTTCTCTTCATATTTAGACCTAAAAATCCAACAATATGGGAATGGGATTAATGCCTCTGGATTCTTATGGAAGAAGAATCATGCAACGCAATGGTAGTGTGCCGAACGCCATTGCCAATCAGTGATACGGTAGCTCTGCTGCATAAATTGATTTACTTTCTGTAGGACAGGGGAATAATAGACTTAAGTACACATGCCAAGAATTATCATTGCTGAGAGGAGTTGCAACTGTACTTAGATCTGAGTAGCATCATACGCAAGTAAATGCATGCAGAACTTGCAGATCGAGGGAACAGTGCTACCGGATGAATCGCAGGATCAACCAGCATTCAACACTACACAGACAGATAGATAGAGATTAAAGCTTACTGTTGTGGCTCGATGACGGCGGATGAGTGCTCGACCCATCGGCGCTCCAGGGGAAACCACTTGAGCACCCTCCCGTCCGACACGCCCGTGTACGGGCCGTCGCCGTCGCCGTCGCCGTCGAACGCCACGCTCTCCGGCCCAACCGCGCCGCTGGAGTCCACGGTGATCAGCACGTCGTCGCTCCGGGACCGGGAGTCCAGGGACAAGAACAACGCCGCCGCCACCGCCACGGCGGCCGCGAGCACCACGAGGCTGGCGTCGGCGCGTCAGCGCACAGCGCACTGCCCTGCCGCCGCCGCCTGCTGCCCGCCTCGCCCCCGCGTCGCGAATCGCCAGCCGCCGTTTGGGGAGGGGGAAGGGGAAGAATCGAAGAAAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0252000.1 | 4 | 8085286 | A | C |
| Osa04LNT0252000.1 | 4 | 8085138 | G | A |
| Osa04LNT0252000.1 | 4 | 8083806 | A | G |
| Osa04LNT0252000.1 | 4 | 8084747 | T | A |
| Osa04LNT0252000.1 | 4 | 8085071 | G | C |
| Osa04LNT0252000.1 | 4 | 8085829 | A | G |
| Osa04LNT0252000.1 | 4 | 8086081 | T | C |
| Osa04LNT0252000.1 | 4 | 8088384 | T | C |
| Osa04LNT0252000.1 | 4 | 8088389 | A | G |
| Osa04LNT0252000.1 | 4 | 8088391 | A | G |
| Osa04LNT0252000.1 | 4 | 8088431 | T | C |
| Osa04LNT0252000.1 | 4 | 8088790 | G | A |
| Osa04LNT0252000.1 | 4 | 8089490 | G | A |
| Osa04LNT0252000.1 | 4 | 8089612 | A | C |
| Osa04LNT0252000.1 | 4 | 8089623 | G | A |
| Osa04LNT0252000.1 | 4 | 8090473 | C | A |
| Osa04LNT0252000.1 | 4 | 8084882 | T | C |
| Osa04LNT0252000.1 | 4 | 8085016 | A | T |
| Osa04LNT0252000.1 | 4 | 8085466 | G | A |
| Osa04LNT0252000.1 | 4 | 8087811 | G | A |
| Osa04LNT0252000.1 | 4 | 8088204 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0252000.1 | osa-miR5542 | Translation | 4.0 | 11.398 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR5834 | Translation | 4.0 | 9.083 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR6247 | Cleavage | 5.0 | 11.422 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR6253 | Translation | 3.5 | 6.317 | 1 | 22 |
| Osa04LNT0252000.1 | osa-miR164a | Translation | 3.5 | 18.324 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR164b | Translation | 3.5 | 18.324 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR319a-5p | Translation | 4.0 | 20.882 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR166k-5p | Cleavage | 4.5 | 14.561 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR393b-3p | Translation | 4.0 | 14.618 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR164f | Translation | 3.5 | 18.324 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR426 | Cleavage | 5.0 | 12.593 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR426 | Cleavage | 5.0 | 16.853 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR1847.1 | Cleavage | 5.0 | 10.251 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR1849 | Translation | 4.0 | 22.16 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR1857-5p | Cleavage | 4.0 | 22.306 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR1857-5p | Cleavage | 4.5 | 14.735 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR1861n | Cleavage | 4.5 | 14.975 | 1 | 22 |
| Osa04LNT0252000.1 | osa-miR1865-5p | Translation | 4.5 | 15.264 | 1 | 24 |
| Osa04LNT0252000.1 | osa-miR1862e | Translation | 5.0 | 20.882 | 1 | 24 |
| Osa04LNT0252000.1 | osa-miR2873b | Cleavage | 4.5 | 17.669 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR5496 | Cleavage | 4.5 | 16.988 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR5497 | Translation | 4.0 | 14.208 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR5506 | Cleavage | 5.0 | 21.248 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR5508 | Cleavage | 5.0 | 11.422 | 1 | 21 |
| Osa04LNT0252000.1 | osa-miR5525 | Cleavage | 5.0 | 21.282 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0252000.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0252000.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0252000.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0252000.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0252000.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0252000.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)