© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0252100.1
GATGCAAAATACAGTGGATTTGAAAGAGAAATAACTGGTGTCGTTCAAGTTTGCACATTCAACAAGAGGTAGAAAAGGAAAATGAAAACGGGCAATAGAGAACTGAAATGCCAAACTAGAATGCGGAATTTTAATCTAGAAAGATCTACAGATGTTAAAATATATACACTCAGTTTGAGAACATACAAGGGAGCCGTAACAACTATGAGAACCAAGTGGAGCTCGGGTGTGTGAGAGTACAATCAGAAAAGAAAAGGATGTGCAGCAAAAGATTATTTACTCTATATCATCACCTCTTTGCTATTGGTTATAATTGGCCTGAGTATTGTGTTCCCATTGACAACCTTTGTGGTCGCAACAAGGAAGTCATAGCCCATCCCTTCCTGAGAACTAAGGAATCGAAGAGCAGCAATCTCTGCAAAAGTAACCCCACCAATAAAGACAACCAAAACCAGAGAACGATGTCCAACCCTGTCAATACTCTGTTGAAGCCCCAAACCTTGGTGTACATCCAATGAAGAATTAATGGCCGAACTACCTCTTTTCAAATCCAGATGAGGACCTGGCAATAGTTTCAACAGTTCTTCAATAGATCGCCATCCAGATCTCACAGCATGCTGAACAAGGCGAATACTGAGAGGGGCGTATCCAGAAAATATGTATGATATATCACTAGGGTTTGCAGTATCATTTACATCAACTATAAGCTGTAGAGCCCTTGTAATACCAATCCAGTTACTTCTTGATTCCTGGCGCTTAAATAGGCCAGCCTTTTCCAGATTGTATAACAAGGGCATGTGCTCAAAGCCATAACTGTGCAGTATTTCCCGCCTCAAGTAGTCAAAATTCTTCTTTGGCAACCCAGCATTTGTAAGTGAAAGTAACACTAGAAGGCGAAGAACATTTTCAATAGGCTCCTGCTTATGTATCATCTCTTCAATGTATTCAAAACATATTTCAAAGTTTTGCACCTCCAATATTGTTTGTTCAATGTCTAATCGGGCATGAAAGGAAGGTTTTCCAGTAAATGATTGCAAGTGTTGTGCCAAATGAACATGCCTAGCTATCTCTGGCAGTGAATGTAACCTCTTCACAAAGTCCTTCAGCTCCGAAACCGATTGAGTATTGGTGGATTTTACTTCGGCGTAATCTTGCTGAATAGATGTTGCCTTTTGGCGCAAGACCTGAACTACAACTTCAAAATTGAGATCTCGAATTTCCTTGTACAACTTATCACTTGAATTCAGTGGAACTTTAACTTTTTTACCATCTTGTTGGGCTCCCATAATAGTGGCATCAACCTCCACAGATCCATTGTTTATTTGCAACATCTCATCTAATAAACCTTCATATGTCAACTGAGAGCACATCGGTGTCACTAAATCCACCTCTCTGTCTAACAAAATAACAGTGTTTATCTCCGGAGTCCCCATATCATCCATGTTGACAGGATCTTCCTGTTGCATACTATTCAGCAACTCTGCGGCTTTGGTGGATGCAACACCCTTGGCCCGAACATTGGGAATTACTCCAAAGGCAAACTCTAACTTATGGATAGCTTTTGCAACATGCCAAACAGAACTAGTATCCCCTTCAATAAGGCATTCCTGCAGAGAATGATCAAGTTCAAAACAAATCACATCTTCATCCAATGGAACTAGATACAAGGGGTACTCTCCGAGTGTCAATTTCTGATGAACTTTTTCCTCCTCCAGAATCTTTTCGCAGGCAACTGTGCGCCGTGGCACAAAGTAAAGAAAGAATTCCCTCTGAAGCCCTTTAGGCTCATCGTTCTTAATCTGGCTTGCAATTAATTTCATGAACTTCAGCTCAGAGCGTACGAGATATAGGATCTTAGCGCACTCAGTTTGGAGGGGTTCAGCAGAGAGAAGCCGCAACTCTGCACCATATTCCTTTAGCAGTGAGGTCTGCAGAATCAGAGACAGGGTACCCGCGAGCTTGGGATCAATAACTACACACTTCTTCCCCCTAATACTCTTGAGGATGTTTAGCAGGTCCTTCTGCGACTGCTCCCTGAGGGCCGCGAGATTGAGAGGAGCATTGTCGAGATTGGGGATCTGAGCCATAGTCCCCCAATCCAACTCCTCGTTCTCAGATTCAGAATCCTGCTTACTTCAGAGCCGGGCCAAACGGGTGCTCACCGGCGACGAGGATGCGGGCGGAAGCAGCAGGTCGGCGGCGCCCGCTGCTGCCCCCGGGACGGAGATCGGCGCTGGGCGGCGCCGGCGGGGAACGAGCTGGCGCGGAGAGACGGGGGAGTCGAGGCCGAGGGGAAGGAAAGGGGGAGAGAGAACGAGTCTA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0252100.1 | 4 | 8218988 | A | T |
| Osa04LNT0252100.1 | 4 | 8219016 | T | C |
| Osa04LNT0252100.1 | 4 | 8219294 | T | A |
| Osa04LNT0252100.1 | 4 | 8219402 | A | G |
| Osa04LNT0252100.1 | 4 | 8220909 | T | C |
| Osa04LNT0252100.1 | 4 | 8221214 | T | C |
| Osa04LNT0252100.1 | 4 | 8222193 | C | A |
| Osa04LNT0252100.1 | 4 | 8222267 | G | A |
| Osa04LNT0252100.1 | 4 | 8222660 | T | A |
| Osa04LNT0252100.1 | 4 | 8223153 | G | A |
| Osa04LNT0252100.1 | 4 | 8223154 | T | C |
| Osa04LNT0252100.1 | 4 | 8223267 | A | C |
| Osa04LNT0252100.1 | 4 | 8223316 | A | G |
| Osa04LNT0252100.1 | 4 | 8223804 | T | C |
| Osa04LNT0252100.1 | 4 | 8224090 | A | G |
| Osa04LNT0252100.1 | 4 | 8224569 | T | A |
| Osa04LNT0252100.1 | 4 | 8224570 | A | G |
| Osa04LNT0252100.1 | 4 | 8224719 | A | T |
| Osa04LNT0252100.1 | 4 | 8225504 | A | C |
| Osa04LNT0252100.1 | 4 | 8225574 | A | C |
| Osa04LNT0252100.1 | 4 | 8225943 | G | A |
| Osa04LNT0252100.1 | 4 | 8226202 | A | G |
| Osa04LNT0252100.1 | 4 | 8226414 | A | G |
| Osa04LNT0252100.1 | 4 | 8226734 | C | A |
| Osa04LNT0252100.1 | 4 | 8226993 | A | G |
| Osa04LNT0252100.1 | 4 | 8228448 | C | A |
| Osa04LNT0252100.1 | 4 | 8229392 | A | T |
| Osa04LNT0252100.1 | 4 | 8229808 | A | T |
| Osa04LNT0252100.1 | 4 | 8230176 | T | C |
| Osa04LNT0252100.1 | 4 | 8230186 | G | A |
| Osa04LNT0252100.1 | 4 | 8230308 | T | C |
| Osa04LNT0252100.1 | 4 | 8230506 | T | A |
| Osa04LNT0252100.1 | 4 | 8231711 | A | C |
| Osa04LNT0252100.1 | 4 | 8232406 | C | T |
| Osa04LNT0252100.1 | 4 | 8221102 | C | T |
| Osa04LNT0252100.1 | 4 | 8231030 | A | G |
| Osa04LNT0252100.1 | 4 | 8216681 | A | C |
| Osa04LNT0252100.1 | 4 | 8217024 | T | C |
| Osa04LNT0252100.1 | 4 | 8217101 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0252100.1 | osa-miR399a | Cleavage | 4.5 | 9.412 | 1 | 21 |
| Osa04LNT0252100.1 | osa-miR399b | Cleavage | 4.5 | 9.412 | 1 | 21 |
| Osa04LNT0252100.1 | osa-miR399c | Cleavage | 4.5 | 9.412 | 1 | 21 |
| Osa04LNT0252100.1 | osa-miR399d | Cleavage | 5.0 | 9.412 | 1 | 21 |
| Osa04LNT0252100.1 | osa-miR399j | Cleavage | 5.0 | 9.412 | 1 | 21 |
| Osa04LNT0252100.1 | osa-miR444b.2 | Translation | 4.5 | 14.212 | 1 | 21 |
| Osa04LNT0252100.1 | osa-miR444c.2 | Translation | 4.5 | 14.212 | 1 | 21 |
| Osa04LNT0252100.1 | osa-miR444d.3 | Cleavage | 4.0 | 15.488 | 1 | 21 |
| Osa04LNT0252100.1 | osa-miR2099-3p | Cleavage | 4.5 | 20.639 | 1 | 20 |
| Osa04LNT0252100.1 | osa-miR5509 | Cleavage | 3.0 | 11.075 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0252100.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0252100.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0252100.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0252100.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0252100.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0252100.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)