© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0252300.1
TATGTATCCCTCTAATTAAGAAAATTGTCAGATCTCTTGTCCCATGGGTTCAGATTTAGTCGGCTCGTGCTATTACAACTTGAAGTTTATTGTGGTCATGATTCATTTTGTATTCTAGTATTGCAGATTTTCTAGTGCCACGGATCACAGCTGGCGAACTGTGAGCTCAACACAACTTCATGAACAAAGCTATCTTTGAGATATTTTCTTTCTTGCGGGAATTTTATCTGGTGCCAACACAGCGCATATGTATCCATCATCAGGTGTACCTGGGAATATCTTGCATGAACCTTGTGGATCTGTCTGTATATGTACTATGCATTTTCAACGCTACAATCGGGTAACCAGTTTCTTATTGTCCAATAATACCGTGCTGATATATACTCCGTATATTTTATCTGCCATGCATGTCTAAGCATTGACGGTGACTTTTTTTCTGTGATTATCATGGGTCCAGCTCCACCGAAACCTTGAAACCTTGTTCAGTTAATCCCCTAAGAAACTTGAAAAGAATTAAGAGAAAAGACGTGGACTTAATCCCCTCGATCTTGTCCGATCTCTTTCTTGTGAGGATTAACCGAAAAATCCTGAAACGGTGAAAATCTCCTAACGGTAGGAAGCAATGAAGAAAAACGCAAGCACCCGCACAAAGGCTTCATTTATAGGAACCATAGGTGACTGAGATTTCTAAAAGTTTTTGGAAATATAGTCATAATTCCAAATATTTTAATCCATAAATATAATCATAATAAACATGACTTGTGATAAACATGACATGTGAAAAAGAGAGTGATTCTACCATGGTGGTACACATGAATATGCTACCAGTAACAATAGCATCTAAGAACACATTTAACACCGAGATGAGAAGAATATACCTAGAGAACGCTCCGAATCCGGAGGCGACAGTGTTGTTGGTTTTGTCGCCGTGTTGCCATTGTAGTTTTCTCTCCTCTATTGCCGTTGTTCCCTTCGTTGCCGGTGACGAAGAGGAAGAATAGCCTATTATTGATGGAGATCGATCTGACCGGAGTAGATCTGTCGGTCTGACCGGTGTAGTTGTTCCGGTCTAACCGCCTGATGTACTGTTGTTGCTTGTCGCCACCACCGGTCTGACCGCCATGGAGCCGCCGATCTAACCGGGTCGATGCCATCGGTCTGACCGCTGATATCTCGCCGATTGGACCACCGCACCTGAGAAAACACAAATCGAAAAGTGGGAGCTCACCGTGGGGCAGCGGCCAAGAGGGCTCGGTGGTGAGGAACGGTGACGGTGGGCTCCTCGGGGTGTGGACAACGGCGGCAGCTCCACGGCATCTCGCGGGTGCGAAGCGGCGGACGGCCACCGGATGGACCTTGACAGGAAGAAGAGGGCTCCGGCTGTGGATGGTGAAGGCGAAGAGGCGGCCGAGGCGCGGCACGGCATGGCAAAGCCGTTGGTGCTGGCAGCACGGCCGGGCGAGGCTTCTCTCGCCAGTGGGGAACGGCTAGAGGCGGTGAAGGAGGCGACGGCTTGGGTAGCGCGGTGAAGGCTTGCTCTTTTTATTATGCCCTTGGCTTGCTTTGCACTCGAGATCCACTTTGAGCCTTGTTCTTTTTATTATGCCCAAACTTTGTGTGTCTGTGTTTGAGTTAGGGATTTGAGTTCTTGTGAGTGCTTGGTGTTGATTGCGTGAAGATTTGTTCAACACTTGTTTCTTGCTTAGGATATTCTTGCTTCATCTTTTACTCTTGGAGGTCGAGGATTCCTAAACAGCGAGGTCATTCTTGAGCCACCGATCTACGTGTGGTTGGCCAGGAGAAGTTTGTTAAGGTTGGTATCGATTCTCTAGATCAGCAAGTAAATTTATAGGGTGCACTAGATCAAGGAGAGATGGTGACACTGAGTTTATACAGGTTCAGGCCCTCAGAAGAGTAGATTGGATCTGTATAGATGTATGCGCGGTACGGCGTATGGAGTAGCACGTAGTGTCCAAGGATTACCCGCGCTAGGGTTTCCAGCTCCTATATAGACCCGGGGAGGCTGACTAAAGTCAGTAGGATATCCTTTATAATCTGGGTACATGTCGCCTATTTACATGAGATAAGACTTGTATTCTTATCTTTAATCCCCTTGCGAAATTACATCATGCGGCATGGGCCTAAACCTAGTCCGCCCACCCCATGCTACACAACCCAAACGCCTAACCTTCGGTACCTAGGTACCGTGTACCCCGTAGTTGGATCTTGCCTCCAAAAGATAAGAGACCACTAGTGGAAGAAGTAGTGCTTTGTGTAACCTCTCGAGGAAAGGGACTCGGCTCTTTGTGAGATCCTCAACGAAGATTAGAATCCCCTCAAGGATTCGAACTTCGGGAACAACTCATCTTGCAAGAACTTCTGTGACATCCTTTTCCCTCTCCCTTCCACTATCTTTGCTTGCTTGCTTGTTTGAGCTTGATGTTCTTGGTTGTGACTAGCTAGATCCATTTTGCTAGTGAGTTTGTCGCTGCTATGCTATTTTTGGAAATATCCGAAGCTCCTTCGGATATATCCGAAATTCCAGCTTCCGCATTTACTTGAGTTTAATTTAGCCTATTAACCCCACACTATAGGCCTAAGTGACCCTTTCAACAAACACCCATTTGCTTAAAGAACATCAGACTCCAACTAGCATAAAAAGCAGTCACCAAATTGTGACGCAACCACACAACTGGATCGGCAAAATTGAGAATGTGGGAACCAAGATCAGCCTGGATGGTGAAGGTTACTACTAGCATATCAGGCTGTTAGCCATAGCCAGTCCAATTGCAGCCTATGGCCAGTCGGATGCAGAACCAGGAAATCTATGCATTGGTTAAAGAATAGAAGAACTGGGGTAACAGTAACACAATGATTCCAACTAAAGAACAGAATATTTTATGGGCAAAATAAACATCCTTCTGCTGTTGGATCACTGCCGAGTTGTAAAAAAATACACCCAACTGAATTTTGCTACTTCATAAATTAATTGTCTACTAAATAAAAACATAAAATCATATCTGCAGCAAGTCACACAAGTCGGCGCAGCTCCCCAGTGAGGAGTGCGAACTGACGGTGCTGTGACAACACGGATAGTGTTATCATGCCTCTCTTTTTAAGGTCACTTACCTCATCAAGGGAAGAAGGGTTCTCCTTTGTTTCTTTGAGTACTGCTTGAAAGATCTGTAGTGGGTCCCCATGACTGACAATAAGAATTGCAGAGCCATGAAGCTCCATTTCTGCAGCAGACAGGAATTGAGAGAATCTAGTAGCAACATCTGCAACGCTCTCGCCACCATCTGGTGCCATTAAGGGATCTACTTCATCTACTGCCCATACTTCTGCATACTTCTCATGTGAAAGCAATTCATGCGATGGCCCAAAATAGCGTTCCCGAAGTTCAACAGCTGGAATGCAGCTGGGAGTATCAAAGGGGACACCAAGCACTCTAGCAACCTCTCTGGCAGTCTCCATGGTCCGTGAGAATGGGGAATATCGGATCTGAACAGAATCCAGTGGCACACCCAATTCCTCAAGCTCCTTACGGAGCGATTCGCCGGCCAAGCGCGCCTGCTCGACGCCCTGCGGCGCCAGCCCAAACTCCGGCTTCGTGCCGTTCTCCAGGGAGGAGACGATGATGCCGCGCTCGTTGGGGACGCTGCGGCCATGGCGGAGGATCCAGTACCTGTTGCGGAAGGAGGGCGCCGGCGCCGGCGGCGAGCTGCTGCCGGAGTCATCCATTCCCCCCCAAATCAAAGCACGTAGTGACACCCGCTCCAATCAAAGAGCGGAGTTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0252300.1 | 4 | 8277494 | C | T |
| Osa04LNT0252300.1 | 4 | 8277772 | A | G |
| Osa04LNT0252300.1 | 4 | 8278234 | A | G |
| Osa04LNT0252300.1 | 4 | 8278283 | T | C |
| Osa04LNT0252300.1 | 4 | 8278425 | A | G |
| Osa04LNT0252300.1 | 4 | 8278448 | A | C |
| Osa04LNT0252300.1 | 4 | 8278574 | T | C |
| Osa04LNT0252300.1 | 4 | 8278762 | A | G |
| Osa04LNT0252300.1 | 4 | 8279394 | A | G |
| Osa04LNT0252300.1 | 4 | 8280319 | T | A |
| Osa04LNT0252300.1 | 4 | 8280820 | T | C |
| Osa04LNT0252300.1 | 4 | 8280900 | T | A |
| Osa04LNT0252300.1 | 4 | 8281002 | A | G |
| Osa04LNT0252300.1 | 4 | 8281091 | C | A |
| Osa04LNT0252300.1 | 4 | 8281527 | C | T |
| Osa04LNT0252300.1 | 4 | 8281687 | A | G |
| Osa04LNT0252300.1 | 4 | 8282136 | A | T |
| Osa04LNT0252300.1 | 4 | 8282442 | G | C |
| Osa04LNT0252300.1 | 4 | 8285044 | C | G |
| Osa04LNT0252300.1 | 4 | 8279238 | G | T |
| Osa04LNT0252300.1 | 4 | 8278950 | T | C |
| Osa04LNT0252300.1 | 4 | 8284083 | A | T |
| Osa04LNT0252300.1 | 4 | 8282448 | T | A |
| Osa04LNT0252300.1 | 4 | 8282614 | C | G |
| Osa04LNT0252300.1 | 4 | 8282700 | A | G |
| Osa04LNT0252300.1 | 4 | 8282845 | A | G |
| Osa04LNT0252300.1 | 4 | 8283916 | T | C |
| Osa04LNT0252300.1 | 4 | 8284019 | G | A |
| Osa04LNT0252300.1 | 4 | 8284140 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0252300.1 | osa-miR5540 | Cleavage | 5.0 | 17.152 | 1 | 21 |
| Osa04LNT0252300.1 | osa-miR6251 | Translation | 4.5 | 18.245 | 1 | 21 |
| Osa04LNT0252300.1 | osa-miR435 | Translation | 4.5 | 10.382 | 1 | 20 |
| Osa04LNT0252300.1 | osa-miR815a | Cleavage | 5.0 | 12.85 | 1 | 21 |
| Osa04LNT0252300.1 | osa-miR815b | Cleavage | 5.0 | 12.85 | 1 | 21 |
| Osa04LNT0252300.1 | osa-miR815c | Cleavage | 5.0 | 12.85 | 1 | 21 |
| Osa04LNT0252300.1 | osa-miR2099-5p | Cleavage | 5.0 | 17.323 | 1 | 22 |
| Osa04LNT0252300.1 | osa-miR2866 | Translation | 4.5 | 23.943 | 1 | 20 |
| Osa04LNT0252300.1 | osa-miR5149 | Cleavage | 3.5 | 21.829 | 1 | 22 |
| Osa04LNT0252300.1 | osa-miR5337a | Cleavage | 4.0 | 16.977 | 1 | 21 |
| Osa04LNT0252300.1 | osa-miR5340 | Cleavage | 5.0 | 18.962 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0252300.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0252300.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0252300.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0252300.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0252300.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0252300.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)