\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0023100.1

AGGAGCAGGTAGAAGAGGAGCATATACTCCCTCTGTCCCAAAAAGAGTCGACTCCTGGATTCCCCATGCAAGTTTAAGACGAAGGTGAAAATACCAAAATACCCTCATCAGTGTTTGTCGTTCTTGTCGTTTTTTTATCCATCGATTAGTAGTACTCCAGTACATATAGGAGGCGTCTGCCGCATACAAGAAGGCTAGAAAATTTGGATTTTTATACTACAGAAAGAAAGAAAAGACATCTCTCCAATCTGAAAAGAAAAAAAAGAGAAGAATAAGTGCTCTGAATTCACGAGCAAGAACCAATCAATTTTTACACTTGCCAAAGGAAAAGATAACATCTCTACAACCAAACGAAATGCTTTGAATTCACCTGCATGAACTAGGAAGAACTAAGAACATAGAAGAACAAAAAAAACACAGAAGAATCAAGAACAAAAAAGAAATTAAATCTGCATCAAATCCGCCAACAGCACTGCATCCATCAATCGCCTCCGCCTTGTGCATCACATCTCCGAAGCTGCCGCCGCATCCGAGCCACCTCCACCCGCCGTCGTGGTCGCCGCCGCCTCGGATCGGATCTATCCGCCGCCGCTGCAAGCAGGTGGACGTGGAGAAGCGGGAGAGACGGGAGCGAGGAGGAGCGGCATGGAGCGGGAAGGAAGGTGTGGGGAGGAGCGGGAGAGATGGGTGGAGCGAGGAGGGGAACTGGATGGTGGATGCGATGGGGATTCTGGAGGAGTCGTGCGAACTCGCGCGAGAGAGACG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.991933
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0023100.1 1 20450679 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0023100.1 osa-miR6245 Translation 5.0 18.215 1 21
Osa01LNT0023100.1 osa-miR1436 Cleavage 4.5 17.75 1 21
Osa01LNT0023100.1 osa-miR1439 Cleavage 3.0 15.07 1 21
Osa01LNT0023100.1 osa-miR2103 Cleavage 4.5 9.801 1 22
Osa01LNT0023100.1 osa-miR2872 Cleavage 5.0 15.933 1 21
Osa01LNT0023100.1 osa-miR5077 Translation 5.0 14.152 1 19
Osa01LNT0023100.1 osa-miR5161 Cleavage 4.5 17.722 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0023100.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0023100.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0023100.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0023100.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0023100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0023100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0023100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0023100.1 1 qNVB-1-1 Morphological trait Culm/leaf R2159 C178
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus