© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0253000.1
CTTGGTTTTAATTAATTGACAACACATGCTTCTAGATAAAAGGTGTACACTTGGATGCGTCATTTGATAGCACGAGTCAGGAACATTGCTATACATTCACCAGTTGCTGTAACTGCCTCGAGGTAACACTAATCCTTAATTTCCTATGGTTTCTGACCTACTGATCCTCTCTTACGTTCTTTCCTTTTCCTAGTTTACAACTACTGACCTATTTCTTCTAGTATACATGTACAATAGAAGAAATGTCTAGTGAAATATGTACAAACGGACCTAAATATATAGTTGCGGAGTTAGCTCTGTACAGTATTGCAAGCTAGAAAGCATGCATGGGTTGAGTACCTTGTTTCTCAAGCACATGGAGCCATGCATTGCTTGAGCCACGATGGTCTGAATGGCTAATGGTAATGGAGGTGGCATTTGTCGAGAAGAAACTGACCCGGCTGGACAATAAAAAATTGGTAGTGATGCATGTCACTTGAAGGGTGATCTTGGTGATCTATCTACTAGTCCATCTTTAGACTTTACAGGAGTACGGTCCTGGTTTGCCTCCTTCTCAGCCTCCTTCTGTGCTTTCTTCTTGTCAGCCTCAATCTGCTTTATGTTCTCCTCATGTGCTTTCCGAAATAACCCCACAAAGTTCAGAAGAGTAGACGTGACTTGTTCAAAAGGACATTTTGCAGGATCCTCTCCAAAATAATAGGCTAGTGCATCCGCACTTTTACCTACTTCAGCATATAGTGCTGACAAGGACCTTACATCAGCTCCAGAAGCATCAGTGAACTCCTTCAAAGTCTTGCGGAAAACCTCAGAAACGGGCCCATCACTTTCTGAAGCAGCTAGTTCTTGTTCAACCTTCTGCAGCCCTTTCACAACTGCTTGCTGCTCCTCAGCCAATGCTTTCAGTTGCAACTTAGAAGCAGCTTCTAGGTTGACAAATTCCTCATAAAAATCCAGTAAATGTGGTGATTTGTCCGCAAGGCCCTTACAAAGAAAGTGCATTAGTGTCATTCTACTGTTGTTTGCACGAGTGTCTGTAAGTTTTAATAGGCTGTCCAAGCGAAAACCAAGAGCCTGGCCTCTTGGTGTTCCCTGATTTAATTTATTTCCTAGAAACAGAATTTTCTCCATGATCACCTTTAACTTCTCAGAGCCTCTGAGCTCCTCACAAGCGGATGACACAGTCAGCAAATTCTTTCTAACATCCCTAATCTGTGATTGAAATTGAATCTTGAAAGCAAATATCCTAAACTTAGATTCAACCCTCGGCACCTTCATAAGCTCTAGAAAAAACTGCTCACACTTTCCAAGAGTTTCCTTGTCTCCAGTGTAGTTCTTTAGAAGTTCCATCTCCTCTTTTGTTGGGCAAAATTTTATGAGATTTTCCAGTTGATCAGCGTCTAGAACTGAATCATCCAAAGCTAGAGCAGCACTCATCATATCAGGTAGTGGCATTTTGATCTTAGTTAACATGATCTCTGTGTTATTGGCTCGTCTTAAATCAATCAGATGAACTTTGTCAGGTTTTGATCCAAGAGATTTGCTAGCTCCATCTGATTTTGAACCACCTTTTGTCTTTGGAGCAATAGCAAAAAGAGACTCCAATTCTTTCACATCAAATTCAGAATGGCTATTAGCATCTGCTTGCTTTTGTATTTCTGCCCATAACTCCCATGCATGCTCTTGTTACTTTAACCCAATGTAGTGGTTTTAGAGTTGACCTTCTTGCTGTGGCAGCTGAGTTCAGCCCCAAGGAACGAGTAAGTCCATGTCCTACTACACCTCTGCCACCAGGTGGAGCAGGCAAACCCCTTCCACCAGGGGGTGGAGGAGGACCACCAGGCACACCAGGAGGCATTGGAGGAGCAGGTGCACCCGGAGGGGTAGGGGGGCCACCTACCCCACCATGTCCTCTAGGGGGTGGAGGTGGTGGTGCAACCCCTCCATGTGCATTGGGAGGTGGAGTTCCACCTCGAAATCCAGCTGGAGGTGGTGGAGCTGGAGGCCCTCCTAGCCCTCCAACAGGAGGTGGAGGAGGAACTCCTCCGATTCCTTCAGGTAAAGGAGGTGCTGGTGGAGCTTGATGCCCACCTAGCCCTCCAATAGGAGGTGGAGGAGGAACTCCTGTGATTCCTCCAGGTGGAGGAGGAGGTGGTGGAGCCCCTGCACCAATGCTAGGAGGAGGTGGAGCCACTCCATAATCTCCCAGAGTTGGTGGCAGAGGTGGTGGCAGAGGTGGAATGCCACCTTGAATTCCTACTGATGTATTTTCTCTCTGAGGAGGAGGTGGTGATGGTGGCGATGGAGCTCCTCCAACTTCTCCTGGAAGATAATGTGGCCTTTCTGGAGGATGATGTGGACACCGTTTCCATTCAAGATGAGATAATGGTGGCAATTGAGGACCAGCATCAATCAATTCAGTAGAAGTTGTAGCTAAAATTCCGTGGCTACCTTCTGGGGGTGGTGGTGGTAGAGGAATTCTAGTATATTTTTTTGCATGATCTTCATAAAAGGAACAAGGTGATGTCGTTAAATCTTTACTAAAAGTAGAATGATGTTCTCCAAAGGGAGGTGGTGGTGGTGGTGCAGGTACTACAACATGCCTGGTATGAGAAGGAATAACACATTCATGTACTTTATGTAGAAGTGGTGGTGGTGGTGATGGAAGAGGAGATGTAGTTGCATATTTTGTAGGAAAAGATGGACAATCAGGGGATTGAGGTGGAGATGGAGTTGGCAAACATTCTTTTGGGAGAGGTGGAGGAGGGGGAGGTAATATGTATGAATGTTCTCTTAGGGAGGATGTGATTGGAGATAAACATGAAGTTTCTAGAAGTCCTCTAGGTGGTGGTGGTGGAGGAGGAGGTGCGGTTTTTATATGGGATAGTTGATGTAAAGCTGTAAATGATGTTGAGGTTGAAGGTAAAGCTGATGGAAAAGACAATGGTATTGAGGGTGGGGGTGAGGGTGGTGATTGAGGTATCAATGATGGAATCAAAAACATTTCACACCCCACAAGGAATTTTTCTGTTGAAATTTGTACACACTTACCACAAAGAGGAGGTGGAGGTGGTGGAATTGGAATGCCTCCATTTTCTTTACAATGCAATAGCTCATCCTTGCATGCTTCCAAAGGAATGGATAATGTTGGTTGATTCAAAATTGTTTCCATTGGTACTTCCTCGACATAATTTGAACTTGAAGGACCATTTGTTATAGCAATACATGAGGAATCTGCATGCAACGATGTAGATACCGAGGGAGAGAGAATTGGAGTCTTATATTCAATATTCATGGATATATGTTGATATGTATATTCAGAATATCTCAATGAAGATAACTCAATGACTGTTTGGGTTGATGACACCTCACATTCTTCATGTCTTCGAAGAGAGGGATATTGTTGTTCTACTGACATTGCTAGTTCATTGTGTGGATAATCTGAAGACTTTGAATGTATTAGTGGTATTGAATCACTATCCTTGTCTAGAATTGACAACTTTATTTTACACTGTGATGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0253000.1 | 4 | 9380032 | G | A |
| Osa04LNT0253000.1 | 4 | 9376765 | C | T |
| Osa04LNT0253000.1 | 4 | 9377672 | T | C |
| Osa04LNT0253000.1 | 4 | 9377881 | T | C |
| Osa04LNT0253000.1 | 4 | 9378744 | A | G |
| Osa04LNT0253000.1 | 4 | 9379299 | A | G |
| Osa04LNT0253000.1 | 4 | 9380741 | G | A |
| Osa04LNT0253000.1 | 4 | 9381931 | T | C |
| Osa04LNT0253000.1 | 4 | 9382048 | C | A |
| Osa04LNT0253000.1 | 4 | 9382356 | G | C |
| Osa04LNT0253000.1 | 4 | 9382387 | T | C |
| Osa04LNT0253000.1 | 4 | 9382457 | T | C |
| Osa04LNT0253000.1 | 4 | 9382740 | C | T |
| Osa04LNT0253000.1 | 4 | 9384766 | A | G |
| Osa04LNT0253000.1 | 4 | 9384846 | T | C |
| Osa04LNT0253000.1 | 4 | 9385165 | G | A |
| Osa04LNT0253000.1 | 4 | 9385369 | C | T |
| Osa04LNT0253000.1 | 4 | 9385447 | A | T |
| Osa04LNT0253000.1 | 4 | 9385840 | C | T |
| Osa04LNT0253000.1 | 4 | 9386094 | A | G |
| Osa04LNT0253000.1 | 4 | 9386453 | T | G |
| Osa04LNT0253000.1 | 4 | 9386763 | T | C |
| Osa04LNT0253000.1 | 4 | 9387524 | T | C |
| Osa04LNT0253000.1 | 4 | 9388400 | T | A |
| Osa04LNT0253000.1 | 4 | 9388813 | T | C |
| Osa04LNT0253000.1 | 4 | 9388844 | T | C |
| Osa04LNT0253000.1 | 4 | 9381619 | A | C |
| Osa04LNT0253000.1 | 4 | 9387396 | A | G |
| Osa04LNT0253000.1 | 4 | 9380050 | A | G |
| Osa04LNT0253000.1 | 4 | 9379649 | T | C |
| Osa04LNT0253000.1 | 4 | 9379660 | C | T |
| Osa04LNT0253000.1 | 4 | 9379728 | T | C |
| Osa04LNT0253000.1 | 4 | 9379854 | T | C |
| Osa04LNT0253000.1 | 4 | 9379895 | T | C |
| Osa04LNT0253000.1 | 4 | 9380251 | A | G |
| Osa04LNT0253000.1 | 4 | 9380376 | T | C |
| Osa04LNT0253000.1 | 4 | 9380378 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa04LNT0253000.1 | DTM_#DNAt_MULE_japo_Os0053 | Chr4 | - | 9379328 | 9380537 | 1209 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0253000.1 | osa-miR5816 | Translation | 4.5 | 23.611 | 1 | 24 |
| Osa04LNT0253000.1 | osa-miR5835 | Cleavage | 5.0 | 10.786 | 1 | 24 |
| Osa04LNT0253000.1 | osa-miR167a-5p | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167b | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167c-5p | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR164e | Translation | 5.0 | 8.134 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167d-5p | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167e-5p | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167f | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167g | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167h-5p | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167i-5p | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR169f.2 | Cleavage | 4.0 | 20.196 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR171g | Translation | 4.5 | 16.445 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR166h-5p | Translation | 4.0 | 10.854 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR171h | Translation | 5.0 | 16.649 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR171i-3p | Translation | 5.0 | 16.445 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR167j | Cleavage | 5.0 | 13.839 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR414 | Cleavage | 4.5 | 23.806 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR414 | Cleavage | 5.0 | 10.733 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR535-5p | Cleavage | 5.0 | 11.089 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR816 | Translation | 4.0 | 19.223 | 1 | 20 |
| Osa04LNT0253000.1 | osa-miR169r-3p | Cleavage | 5.0 | 20.022 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR1871 | Translation | 4.5 | 15.354 | 1 | 24 |
| Osa04LNT0253000.1 | osa-miR2275a | Translation | 5.0 | 19.827 | 1 | 22 |
| Osa04LNT0253000.1 | osa-miR2275b | Translation | 5.0 | 19.827 | 1 | 22 |
| Osa04LNT0253000.1 | osa-miR2876-3p | Cleavage | 5.0 | 11.382 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR5149 | Translation | 4.5 | 14.556 | 1 | 22 |
| Osa04LNT0253000.1 | osa-miR5149 | Cleavage | 5.0 | 17.162 | 1 | 22 |
| Osa04LNT0253000.1 | osa-miR5155 | Translation | 5.0 | 13.403 | 1 | 24 |
| Osa04LNT0253000.1 | osa-miR5505 | Cleavage | 5.0 | 12.143 | 1 | 22 |
| Osa04LNT0253000.1 | osa-miR1428a-3p | Translation | 3.5 | 12.799 | 1 | 21 |
| Osa04LNT0253000.1 | osa-miR6245 | Cleavage | 5.0 | 12.896 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0253000.1 | 4 | qPEN-4 | Morphological trait | Panicle/flower | RG190 | RG908 |
| Osa04LNT0253000.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0253000.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0253000.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0253000.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0253000.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0253000.1 | 4 | qCER4-1 | Morphological trait | Shoot/Seedling | RG190 | RZ69 |
| Osa04LNT0253000.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0253000.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0253000.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)