© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0023400.1
ATGGATACTTTCGGCTATATCTGAAATTACAATGCAGTGCATCTACATTGATACCCTCTGATTTATGGAAAGAATAATGACGTGCCACTCCACAAACTTTGGCACTACAAAGGTCGGGCAACTGATCTACTGCATAACAATATAAATGTAATAGTTTGCTCGAAACACTAAGATGCAACTAGCAGATCAAAATCTAACATTCGTTTTACACTGGACATAAGTAACAGATGTGTATTAACTGTAAAAAAATGTGAATCAGCAGGTCAATGTCATGATATCACTGCTGTACATACAGATAATGTTACAACAGTTGTACACGCTCAACTCCAAACCAAAATTGTACATCTCTACCAAATGAAAGTTAAGCTGACGACCTCAGTTGTCCAAGGTCCAATTCTTCCATAATCACGACTGCAGAACTCCAACAGCAAGTTAATTGTAATCCTCACATGAACAGTCAGGCAAGAAGCAAGCTGAGAAGCATCATGGCGGACAAAAGCAGAAACAGTTTGCTATTTCTCTGTCTTCACATCCAACGACCTGAGCTCTTGTAATAATTCCTCATATTTCTTTCTTTCCAAAGCAATTTGAGATCGGAGCTTTTGTTCCTTCAGAGCAAGTTGTTTTGCTGACTCCTCGTATTGCAAGCATTCGCCACGCAACTTATCATTCTCTAGTGTCAAAGTCCTGTATTCGTTAAACCGTCTCCGTTGAGAAACGTCCAAGTGAGATCCATCTTGGTCAGCACTGTCTGTCTTGGATCCAAGGGCATCAATATTTCTCTTCAATCCCATCTGTTTTTGCCTTAATGCAGGGGCCATAAATGTAGGGACAGCACAGCTGCTTGTCGGAATATCAGCAGCCAATAGCTGACGTGGAACAATTGGCGGGGAACTGCCAGCATTCATCTGATTAGCACGATTAAGTGCACGGGAAGATTTAGGTAATTTTTTGTTGTCATAACCAATACGATGGCAATGCAGGTCCCAGTATTCATATGTCATTTCTTTCAAGCGGCTCTCCAGCCTTTGATAAAGGACCGACTTTTCAAAATCTTGCTTGTCATGGGTAGGTTTGATGAAGTTTGCCTCCAGAATGCCCACAACTCCTCGCCCTTTGCCATATGAGTTGTTCGCAACTTTCCAAAATGGCGCTATTAAACGATTCTTGTGGTACACATTAAAGCCTTGTACATCAATTTCTGGGGCGCCTTTGACAAATCCAATGGTGGTTATTGCAGATAGCTCTGCAAGCCCAGCAATTTGTGGTTTATACAACACGCATTCAGGATACATCAAATCATTTATTACATTATGTGATTCCACATCATGTCCACGCAAGACTATTCTGAAATTATCAGGAATGTGAAGGTACAAGACAGATGTGTATGCTCTAAGAGAATAACGGAGTCGAGTTGAAACGTAGTTCTGTGTTGCGACCTTATCTGCCTTGTTGGTATTCACCTTCCTGTGTGCCCCAGTAATGAGGATATCCTTCTTATCGGAGTTGAAATCAAGCTCCATATCCCCATCATCATTGAACCAGAGGTTGAATACAATTATTTTTGTTCCATGCTCTCCGATATCATCAAATTGTTTGAGCAACTCAGCTTCACTAGCAAAAGGGGACCATTTCAAGAGGATCGCTAAATTTGAAGAGAAGAGCTTCTGATCATGACGCAGCATCTGAGTATACGAAGCTGTTGATATATCATACTGATAATCAACTGTTGGAACCAAAACATCATCGCAGCCAGTTTCCATCAAAAATGTGTATGAAAGAAGACCGATACTTCTTGTTGGCACCCAGTTATTTTGGTTTTGTGTAAAAACAATCACATCTGCTCCAAGCCTCATTGTGCTAGTTTTGAATCCATTTCCATATTGCCCGATTAAAGCATCGGACTGCTTATCTGAAAATCCAAAGCTCATGCAGCGTCTCAGTGCCTCTGGATCCATTCCCCCTCCATCATCTTGAATTAACAATGAGGAACTCCCATCTCGTGGGTTTGTAAATTCATTAACACGAACAAATGTTGCCCCAGTGTTAACCTCGTCAATTGCATTATCAAGAAGCTCGGCAATGGCACCAAAAGCCCACTTGTGGGAAGTAGCATTCGAGTGCAGGAACCTGGGATTAATCCGAAGTCGGTTCCGCCCACCGGGTGCATCGGCGTCGGGGTTGCGCTGGGCGACGACGTAGTCGCCCGACTTCCAGAACTGGCGGCAGAGGCGCGGCGCCGGGAGGGCGACCTTGGTGGAGGGGGTGGACGGGGAATAGCCCGCGGCCAGCAGGGGCACCGGCGTCAGCACCGGGAGCTCCTCCTTCACGGGCACGAGCGCGCCGCTGCCACCGACGACGACGCCCGGTGGCTGGAGCGGGTACAGCAGCGCGGGCTTCACATCGACGAGCGCGTACGGCGTGACGTCGCGAGGGGACGTGGAGGGCGCGACGCGGCGCGCGGCTGCGGCTGCGGCGGCGCTGGTGCTGGGGACGGGCACCTCGTCGTCGTCGTCGCTGGAGAGATCGATCACATCGGCGGCGGCGGCGGTGGACCGCATCGCCGGCGAAGGGGGAAGCGGGTGTTTGTGTTTGTTAGGGCTACCTCTCTCTCTAAGTCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0023400.1 | 1 | 20489442 | A | G |
| Osa01LNT0023400.1 | 1 | 20490712 | T | C |
| Osa01LNT0023400.1 | 1 | 20491108 | A | G |
| Osa01LNT0023400.1 | 1 | 20491448 | T | G |
| Osa01LNT0023400.1 | 1 | 20492278 | T | G |
| Osa01LNT0023400.1 | 1 | 20493195 | A | C |
| Osa01LNT0023400.1 | 1 | 20493722 | A | C |
| Osa01LNT0023400.1 | 1 | 20493878 | G | A |
| Osa01LNT0023400.1 | 1 | 20494494 | A | G |
| Osa01LNT0023400.1 | 1 | 20494941 | T | A |
| Osa01LNT0023400.1 | 1 | 20495410 | T | C |
| Osa01LNT0023400.1 | 1 | 20496636 | G | A |
| Osa01LNT0023400.1 | 1 | 20496852 | C | G |
| Osa01LNT0023400.1 | 1 | 20497076 | C | T |
| Osa01LNT0023400.1 | 1 | 20497976 | T | C |
| Osa01LNT0023400.1 | 1 | 20489823 | A | C |
| Osa01LNT0023400.1 | 1 | 20498906 | A | T |
| Osa01LNT0023400.1 | 1 | 20499086 | C | G |
| Osa01LNT0023400.1 | 1 | 20491856 | G | A |
| Osa01LNT0023400.1 | 1 | 20492214 | C | T |
| Osa01LNT0023400.1 | 1 | 20499998 | A | T |
| Osa01LNT0023400.1 | 1 | 20500156 | A | G |
| Osa01LNT0023400.1 | 1 | 20500714 | A | G |
| Osa01LNT0023400.1 | 1 | 20500823 | A | T |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0023400.1 | DTM_#DNAt_MULE_japo_Os0243 | Chr1 | - | 20498225 | 20498992 | 767 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0023400.1 | osa-miR5536 | Cleavage | 4.5 | 16.625 | 1 | 22 |
| Osa01LNT0023400.1 | osa-miR159c | Cleavage | 4.5 | 16.749 | 1 | 21 |
| Osa01LNT0023400.1 | osa-miR159d | Cleavage | 4.5 | 16.749 | 1 | 21 |
| Osa01LNT0023400.1 | osa-miR159e | Cleavage | 4.5 | 16.749 | 1 | 21 |
| Osa01LNT0023400.1 | osa-miR166i-5p | Translation | 5.0 | 17.929 | 1 | 21 |
| Osa01LNT0023400.1 | osa-miR1877 | Cleavage | 2.5 | 19.28 | 1 | 24 |
| Osa01LNT0023400.1 | osa-miR2095-5p | Cleavage | 4.5 | 17.184 | 1 | 22 |
| Osa01LNT0023400.1 | osa-miR2875 | Translation | 4.5 | 18.182 | 1 | 24 |
| Osa01LNT0023400.1 | osa-miR2922 | Cleavage | 4.0 | 15.02 | 1 | 20 |
| Osa01LNT0023400.1 | osa-miR5147 | Cleavage | 5.0 | 16.048 | 1 | 21 |
| Osa01LNT0023400.1 | osa-miR1871 | Cleavage | 5.0 | 20.265 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0023400.1 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0023400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0023400.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0023400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0023400.1 | 1 | qNVB-1-1 | Morphological trait | Culm/leaf | R2159 | C178 |
| Osa01LNT0023400.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0023400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0023400.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)