© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0253600.1
GTGCACCTCCTCGCGGACCTCATCATCCATGGAGTTGGTGACCACGAGCACTTCCTCACCGGCCGCGTCCATGGAGTCGGGGACTACGAGCTCTTCCTCGCTCGTCTTTTCCATAGACTCCTAGCCCCTTCATTACTCATCCAGATTCACTAACATCAATATAAATTTGGACATATGTATGGAACAAATACATAGATCCATGTGAAACAAAGGAAGTAGCAACCTTTGCTCACCACTTCATCACAACTTTTACTAGTAAAACCAATTCAGAATAATTATTCGCGTCCAAAAGAAGAAAGAAATTAGTGAAGTACACGATAACGAACATATTGTCCACCAATCTCATAATACAGTTTCTGGCACACTGCTATATTATAGGCACACTAGGCTGTAAGCCTGTAGTTTAATGGGAACCTGTGTAAACTTTTCGACACAACGTTATATGCGCACTCATAGAGTTCTATAATAGAAAAAAGATCAGCAAATGATTATAAAAGAGAAAGTCAAGAAAGAGGCCTTTGTATATTGTTATATCTGTAGATCGTCAAGTGTCAAATCATCGGTTGATAACATTTTTAATTTAGTGATGAACTGGGGTGGATCATCAAGACTAGAGGAGCCAAGGATAATTTCTCTCTTCAGTTTTGATGATAGCTTGTGAGCAGCACATAACTCAGATCGAGTAGCACCACCAATAACAAAAACAAATAATCGCTGACCCAACTTTCTGCTATTACTTGATGTGTGCTTCAGTACCGAGTCACTTGAATACCCATCATCAGAGTCTCGAGGCCTGGCCCATGTGCCACCTGTCCTTCTAGATCTCATGGATTGAGCTGGCTGGTGAGCTGGGCTTGTTTGGGTAGATGCACTTGGAATTCCCCGGAAACTAGGACTAGGGTCATTCAAATAGTGATACTCATCTTTTGGTAGCTCACCCTTGCTAAGTTTCTCAATCAACTCCTCCAGGATGGGATAAAACCGGGACAACATCCATTTTGATTCTTCTCCTATCCGCTCCTTTCTGATACCATGCCTTTTCTTACGTAGATCAAATTTCAGAGTAAAGCCACCTGCCGAAGACTTTTTAGAATCATGCCCACAAAGGCAACGCATATTACTCACTGCAATCATGTCATCAGCAGATAATCCTGCGAGCTGCATCAACTTTGCACCCTTATCACTTCGAGTTTTATCTGGATTGATGGCAGCATAAACCATAAGCAAACGCAGCTTATTTTCACGACTGATATCCAAATGTGTCCTGAAGAAATTTATGAGTTCTTTTGTCCCAGCATCACCAAACACAAGATCTTGCTCAAGCTGCCCAACATCTTTCAATTGTTGCTCTTTAATTGTGCTATTGAGCTTTCCAGCAATCTCAACATGAAGCGCAAGCTTGTCAATTTGATCACTGTACTGCGGAAGAGCTTGAACCATTTTTTGCAACTCTTTGGTTGATAAATCTCCACCATTTCTTGCTTGATGTAGTTGAGCAGCTTTGTTTTTTGATACAAAATTGGTCATCTTCTCATGCAATCTTTCACTAGCATTGGCTATATGTACATGCCGAAGCTCAAGCCATATTGGATCATGATCCTCCAACAAAACCTCCTTGTTCTCAGTGCCTGAACCAGACTTGCTTGGGACCTGTTGTACATACTTGTTGCCATCCATGCAGAGTAGATCATGACACATGGCATCATAGGTCCATTCGTGAATAATTGGTGCGATCTGATCTATTGATCGGTCTACGATAAGTAATTCACATGTTTCAGTCTGAGGGAATTCAGGTATCATAGCCTTAAATCTTGCAAGGCAATTCCACACACCAGCAGCAAGCTTTGTGGGTGCCAAATCTCGTAGTGTTGTCAAAGTAGAAGCATCAATCGTCCTGGCAACACGATAGTGCACACGAGGAAATTCCCTCATTGATGCGAATACTGTAGCAATACGAGTGGCCATCATGTTAAGGCAAGAGTTATACTTGAGTGAACCTTCTGCATTTTCACTAAATAGCTCTTCTAGGGCCTTGTCATGGTCAGTTGTAAAGCCCTGGCTATCGATAGCAAAATATTCCAGATTCATCTCACTGAGTGCACCTATGCGTGCTCTAACATTTGAATCTTTTTTTATTTGGGCCACCAACTCTCTTTGTACGGGTGAACTGAAAAACACATAGGCTTTCTTATACAGTGGTATTTTCCCTGACATGTCGGACATGAATATGCGAATGTTTTCCTTAGTTGGTTGAATGAAATAAATTGCATCCATCAATGGTAATGGTTGCCTCCGCATGTATAAGTCCTCAACCAATGAAACACCTTCTTCCATCACATCTGCCATCTTGCAAGAAAATGACATAATCTTCACCGTAAGTTTGTCCATGATAAGAACCTTCCATGCCGATTTTGAGCTCTTCTTCGTTGATCTCAACATTTCAAATAATAAACGATCCCGGGTGATCTGGCGGAAGCTCCTGTAGTCGGCGCCGCTGCGCGAGGAGATGACCGAGTCCATCGACATGGCCGCCCGGAGAACCCCGACTGCCTCGAGACCGCCGGTGACGTCGCAGCACGCCGTAGGTTTAGGGCTCGCGGCCGCGCCACCGACTCGGAAGACGCGGAGGCGATTCGGGTGGAGCAGCGGATTCCACTTGCGGAAAATGAGGTCCCCGGAGGCCCCCACTGCCTTGTCACAGCCGGAGATGTCACAGCACGCGTTAGGGGTTAGGGCTCCGCGGCCGCGCCACCGGTTCGGAAGAAGCGGCGGCGATTCGGGCGGAGCAGAGGATTCTGGACTGCGGAGAGGGAGAGCGAGAGAGGGGGACGGAAACGTCGGCAAGAAATCCACCACCGCAAGAGAGGGAGACGGGAGGTGGTAACTGGCTTCCTCCTCCAACGGGATTACAGGAAGCGTGCGAGGCGGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0253600.1 | 4 | 9939400 | T | C |
| Osa04LNT0253600.1 | 4 | 9939784 | T | C |
| Osa04LNT0253600.1 | 4 | 9939808 | G | A |
| Osa04LNT0253600.1 | 4 | 9941278 | C | A |
| Osa04LNT0253600.1 | 4 | 9941614 | A | G |
| Osa04LNT0253600.1 | 4 | 9941928 | A | G |
| Osa04LNT0253600.1 | 4 | 9942328 | A | G |
| Osa04LNT0253600.1 | 4 | 9942586 | C | A |
| Osa04LNT0253600.1 | 4 | 9942874 | A | G |
| Osa04LNT0253600.1 | 4 | 9943033 | C | T |
| Osa04LNT0253600.1 | 4 | 9943752 | A | G |
| Osa04LNT0253600.1 | 4 | 9944492 | G | A |
| Osa04LNT0253600.1 | 4 | 9945475 | A | G |
| Osa04LNT0253600.1 | 4 | 9954534 | A | G |
| Osa04LNT0253600.1 | 4 | 9955382 | C | T |
| Osa04LNT0253600.1 | 4 | 9955394 | A | G |
| Osa04LNT0253600.1 | 4 | 9955524 | A | G |
| Osa04LNT0253600.1 | 4 | 9947654 | G | A |
| Osa04LNT0253600.1 | 4 | 9948661 | A | G |
| Osa04LNT0253600.1 | 4 | 9948927 | G | T |
| Osa04LNT0253600.1 | 4 | 9949578 | T | C |
| Osa04LNT0253600.1 | 4 | 9950708 | T | G |
| Osa04LNT0253600.1 | 4 | 9950793 | A | G |
| Osa04LNT0253600.1 | 4 | 9950923 | A | T |
| Osa04LNT0253600.1 | 4 | 9951167 | T | C |
| Osa04LNT0253600.1 | 4 | 9951914 | T | C |
| Osa04LNT0253600.1 | 4 | 9952976 | A | G |
| Osa04LNT0253600.1 | 4 | 9943931 | A | G |
| Osa04LNT0253600.1 | 4 | 9949021 | A | T |
| Osa04LNT0253600.1 | 4 | 9945603 | G | C |
| Osa04LNT0253600.1 | 4 | 9946131 | G | A |
| Osa04LNT0253600.1 | 4 | 9946799 | A | G |
| Osa04LNT0253600.1 | 4 | 9947130 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0253600.1 | osa-miR5812 | Translation | 4.5 | 12.17 | 1 | 24 |
| Osa04LNT0253600.1 | osa-miR168b | Cleavage | 5.0 | 15.826 | 1 | 21 |
| Osa04LNT0253600.1 | osa-miR169i-5p.2 | Cleavage | 4.5 | 17.484 | 1 | 22 |
| Osa04LNT0253600.1 | osa-miR1861c | Translation | 5.0 | 14.593 | 1 | 22 |
| Osa04LNT0253600.1 | osa-miR396f-3p | Cleavage | 5.0 | 12.445 | 1 | 24 |
| Osa04LNT0253600.1 | osa-miR2868 | Translation | 3.5 | 9.079 | 1 | 20 |
| Osa04LNT0253600.1 | osa-miR5071 | Translation | 4.0 | 16.488 | 1 | 21 |
| Osa04LNT0253600.1 | osa-miR5152-5p | Cleavage | 4.0 | 10.658 | 1 | 21 |
| Osa04LNT0253600.1 | osa-miR5523 | Translation | 4.5 | 24.096 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0253600.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0253600.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0253600.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0253600.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0253600.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0253600.1 | 4 | qCER4-1 | Morphological trait | Shoot/Seedling | RG190 | RZ69 |
| Osa04LNT0253600.1 | 4 | qPEN-4 | Morphological trait | Panicle/flower | RG190 | RG908 |
| Osa04LNT0253600.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0253600.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0253600.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)