© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0253700.1
GGCCCGTATAGTATAGAAGTTCAATGATCTTGAAAACGAACTTACAGCTTCAACCATGTCGCACTACTATAAAAAAAAGGAAATCCAGTAAGCTCAACTAGACTTCTGCTGAAAAGAGGGCGCAGACCTAATTAGCAGTAGATTAGTCTCGTCCTTATAAACCACTATGGCAAACACAGTGCCTTTCTAATTAATCTTGATCACTTCCAACTGTCAAGTGTCAATGATCTCTTTTACATTGTGGCTGCTATCTTCACAAGGTGTCAAATGGTCAGGTCACTGAATTTTGGAAGAATATCCAGCTTCTCCAGCATCATGTGGTTTTAAATAAAAATCGTAGACTAGCATGGTTGTCACAGTTTGCTGAGATAATTCCCTTAATGGCATACATCAACTATTAACCCTTGAGGACTAGCAAGGTTACACCAAAGCTGGTGCCAATTGCCATGAGATCACAGAAATTAGGAAGAAACTTCATGTGGCTTCAGAGTTGGCTAACTGCCAGCTTCTAAATCTGATTGACGCTATTATTTCCAATGTAATCTACAAGAAACTAGTGCCCAGTGAAATATCACTGAAGTTGGACAGTATCTGCGAGCGGGTAGTTCCAATCTGCTGTGCAACATCAAGCTGCTCATCTAATGACAACATCTCATAGTGTGCAAGAAGTTCGAAGTCAATGATGTTATCTGGTCCAGGACGATGTCCCTTCCCATTAGAATGAAACTGCCTGAATGACCTTGGATTCAAGCCACACACATGTGGGACAGCATCTACAAGCTTCCTCTGTAAGCTTTGCAGCCGTCGGAATGTTAGCTCATCAATAGGCGCAATGCATCCAATGCCACCATCCAGATTGCCAAAAAGAAGAGCGAAACGATTTGTCTTTTCAGACGATAAGCCCTGAGTAGGAAGCATTTGCAGCCTCAAAAACTTCGTTATATGGGCTCCGACATGAAATTCTGCTCTGGAGAGGAGCTTCTGCCCCTTCCAGCTCTCAACCATTTTTGGAGCGTAATAGAAGATCTGCACATTCTTATCAGAATCTGAAGCTACAAGGCTCAGCGTGCTTCCATCAATTAAGAACTCAGTTGCAAAGCAATCGAGTGATCCAAAATCTTTTGCCAGGAGACTCAATTGAGAACCTTGCTCTTTCCAGCTCAGAAAATAAATGCTTTTATGAATATCACCAAACAAAACGAAGTTTTTGACAATGTTCAGGCTCACAACATGCAAAGGGGCATCATAGAATGCAACAGCAGTCAATTCAGCACCAGTCCACTTGTTTAATGTGATCTTAGGACCAGAAGCTATCAGCAGATGACCTTGAAGAGACGCAACAGCTGATACAGCACCTTTACTCTCTTTTGAGTAGACTTCAGTGACCAGATTTTGAGAATTTTCACTTTTCGTGAAAGAGAACAGAAGCACACGTCCTCTAGCAGCTACATCCTCCCCAAGAACATAAGCAGTCCCAATGGCCAACAGGGTCTCATTTTCCTTGGTGGTTGTATTATGTAATGTAACAATGCGCACGGTTAGAGCATTTTCAAACAATTGCATTGGAATTGTGGACTTCGTCTCCCAATGTCCACCAGGTTTCTCCAGCTCCAAAATGCGGACCTCAAATTCATCAACAGTATATGTCTTATGAAGGGCATCAGTGCTTGTAACATCGTTATCCATGTGATGAACTGATTCTTGATCAGCCATAGAAGAAAGAACTTGATTTAGGGGACGAACTACAGGAACAGACACTATTAGGGGATAAAGAGATTGCTCTGCATAATACGTGACCTGATGTGGGGTGCCATGCAAAGGGACCTTTTGAACAGGCCAGTAGCTGTCATAGTTATATGCTGAGGGCAATTGGCATATCTTCAGAAAACCCTGTGATGTAACATATATAAAGCCATGAGAACAATTTACATTATGCAGAACAGTAAAGGCTTCAATGGGACCGTCACATAACTGTGGGTGCACCCGCAATCGTTGTCGACAAACCATAACCCAAGCTGGCCTCGTGCCACTAAGAAATAATCCCTCATAGCCACCAACATTGTTAAAGGTTGTTATTCTTGGTCGTCCAAGAGTTGGTATGTCTTCTCGTGATGTTATATCTATAGAAACCCGGTGAAATCTGAGATTTCTGAGCCTGGAATCACTGGCATTGTGATGATCAGCAGAACCTTGAGGTGACAATGGAACCCTTTTCACATTGCTCTCCGAGGCTTCATAAGAGAAGGCATGGTAACACAACAATGTGCCATCATTCAATAGTCCAAAAAGGAAGGGTCTACTGAATTGACCAGACCATCTATGCATTGCAAGCTCAACTATCCGAATGCTATCTCCTGCTTCTTTCTTTAGGGAAGCTTTAGTGCAATCATATCTTTCTTTCGTGCTATCCTCATATATGAGCTGAGAAAATTTATCAACCAAAAGAGCCTCGCCAGAAATAAAATTTTCCACAGAGAAAACACATCGGAAACTAGGCACTTCAAAAATTTCCAGTTTACCGCTTTCATAGCAAATGATACAATATATATCAGATTGATCATGAGATGAAGTACCATTGCCATCAATTGCCTCCGCAATACCAGTAGATAACCATGCATCACTACGTGTCTTTGTCAGCCATGGTTCAGGACCTCTGTCACGATAAAGTGTACAGGCAGCGATTCGCTCACTTGAGCTAATAAATATACTGGGAGCATTCACAGAAAGAGTACAAGTACAATAATCTCCTATAAGAAGTTGAACAGATCCATCAACCATCTTCAAAAGAACATATGGATCTGCAATGGAAGCGCATGCCACACCGAGAGCCTCTGAACTAGATGATTCTGAAGCATGCGTAGTAAAGTTTAGCTCCTGTGTCATGAAAGAACCATCAAGCACACGAGCACCCTTACCATATACCTGTATGACACGCCGCCTCCCAAACAAGTTGCCAGCAGCAATGGTGCTTGCTTGAACAAAGTAATCAACAGTTTCTGTAACCTCTCCTAAGTCATCACCTGTCTCAAGTACCATTGTCCGATTCTCCAGACTTATTATCAGATATGCATGATATTCATTATCTTCTGCCATTTGTCCACGGTAACTCTTATAGTAAACTGTCCAAATACCTCTGCAACTTGGTAATTCCACCTCAGTAATTAAATCAGGACGGATAGATTGTTGAAGGACAGAAAGTGAACCATTTTTACCATGACCAGAACAGCACACCAACTCGTAATTGCTTTGCTTCGCATTTCCCATTGCATTGGGATCTGCATTGGCTCTTAAACCATATGAAAAATCTTTCAGTGGACCAACATTGATCAATGCATCTCTCACAATGTATGATATCTTCTGTGCTGATTCTAAACTGTTTGGTGCAATGATATTCTGAAAGGAAAGTTCCTCAACACTGGTCACATCTTGTAGAACATCAGAAGGAATCCTCTTTAGGCGCTTGGAGAAAGGCAGATCACCTTCAATATCAGCAGAGCGCTCATTTGTTAAATCTTGCAAAACAGATTTTGATGCACAGTAGGAAAATTGCACAAGAAGGCTATCCCCCAGACGACTACCAAGGAAGAAGAATGAGTTTCCAATAGATGTCACAGCCGAACTGAGGACAGATGCTTTTGATTTCATAAGATCTAATCTCTGCACAACTCGCCCATCATAAACCACTGTAAGTAACAGCATCTCTCCAGCCTTTGTCGAGAACATTACAATGTCATTGGACAACCAAGTTGCTTTAGCTGCATCAAGCTCAACTTGGAAATTTGACTTAGAAATTTCTGGGCTGCCATCAGGGTGTGATGAGAAATTGTTCAGGTCAAGAGAACACGATGTGGACTGACTATGGTAATGGATGGAATTTGCACAGATCACAAGAACACCACTAATAGGGGGAGGCACTGCAAGAAGTTGGTATGCATCGTGGGGCAGATTAGCTGCAGACCATATCACTGGATGTTGCTTTAGAGTCATGCTGATGCTAAATGCAGATATCATGCATGTATGGTGCTTTGATAAGATACGCCCAGCCCATGTAGGCTCTTGCTCATGAAGTATGACCAACACAGGCTCAATATAACCTAAAGAAATCATAAATGGAAAACAGCATGAATAGCAAGGTTTCACATTTGGATAGTTGTAGCACTAGTGATGAATATATAAATGGAATGCAAAAGGAGACTCCTCATGATATGCAGATCCAGCACCAGTATCAATTTCCACTATGTCTGAGACTTTATTTTGTCACAGGAAGGAAATATCTCCATGTACAAAAGCAAAATCTTTGACATGGTTCATATCTAAAGCTCGTAAGTCAATCAAATATGACGACTCAATACAAACAGCAGTAGAACTCAATGCACAGGTGGGTTCATCTTCTCCAACTAAGCTGTGGCCAACCTGGGCAGCTTTTAGAATAATCATCTGAAGTCCATAAGCAAGTGCAGCACCACATCTTCCAAGAGGATCAGCCTTTATAACAGGACCCCAAGCAAATGATTCCCTGCCTCTCTTCAGATGCTGCCATTCTGGGCCCTCAAAGCAGTGCATTGAACTAGTACGCAGGCCATGGATAGCATCATCAAACTCCAAACAAGTTATTTTTGCATCCTTAAATGCAAGTGCAATAGTGGCTCGCCTATTCTCCGCTCCATCTGACAACACGGTCATGGACTCAATGTTCCCATGGAGCCTGTAATAGCACACCAGCTCCAGGCGCGCCCCGGAGATACCGTCCAACACGGCACCGGACGAAGAGGACGGTTGGGTGCCACCGCCTCCATCCTCGGCCGCCGTCTCAGCCCTCACGGCGTACACCTCGAGCACGTTCGCGGCCGCCACGACCAGGTTGGGCGAGGGGCCTAAGCGCCTTGGACGCGACGCCGCCGCCGCCGAGTCGATGTCGCCTTCGGGCCCGGGGCCCACCGTCGCGGCGGTGAAGAAGGCGGCGGCGTCCGAGGGGGAGTGGGTGACGAAGCCGGCGGCGCAGTGGTCGACGCCGGTGGGCCAGTGCATCATCTTGTAAGCCGCGTAGCTCATCTTCGTGCGGCTCCGGCAGTCCGGCGGGGCTAGGGTTTGGGACGCGGTGCGATCTGAAATTTTTCAAGCAGAAACGCCACAGGCAAAAGGGGGAAGGAGGACGAAGTGCAGGGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0253700.1 | 4 | 9889178 | T | G |
| Osa04LNT0253700.1 | 4 | 9890475 | C | T |
| Osa04LNT0253700.1 | 4 | 9890603 | G | T |
| Osa04LNT0253700.1 | 4 | 9891502 | A | G |
| Osa04LNT0253700.1 | 4 | 9891864 | A | G |
| Osa04LNT0253700.1 | 4 | 9891869 | T | C |
| Osa04LNT0253700.1 | 4 | 9892076 | G | A |
| Osa04LNT0253700.1 | 4 | 9893261 | A | G |
| Osa04LNT0253700.1 | 4 | 9893431 | A | G |
| Osa04LNT0253700.1 | 4 | 9894275 | T | G |
| Osa04LNT0253700.1 | 4 | 9894776 | A | G |
| Osa04LNT0253700.1 | 4 | 9894801 | G | A |
| Osa04LNT0253700.1 | 4 | 9896522 | A | G |
| Osa04LNT0253700.1 | 4 | 9896590 | G | A |
| Osa04LNT0253700.1 | 4 | 9896930 | T | C |
| Osa04LNT0253700.1 | 4 | 9897516 | C | T |
| Osa04LNT0253700.1 | 4 | 9890091 | A | G |
| Osa04LNT0253700.1 | 4 | 9898439 | A | T |
| Osa04LNT0253700.1 | 4 | 9898807 | G | A |
| Osa04LNT0253700.1 | 4 | 9899450 | A | G |
| Osa04LNT0253700.1 | 4 | 9900040 | A | G |
| Osa04LNT0253700.1 | 4 | 9900614 | C | T |
| Osa04LNT0253700.1 | 4 | 9902377 | A | G |
| Osa04LNT0253700.1 | 4 | 9902687 | G | A |
| Osa04LNT0253700.1 | 4 | 9902822 | G | T |
| Osa04LNT0253700.1 | 4 | 9904554 | A | G |
| Osa04LNT0253700.1 | 4 | 9905000 | G | C |
| Osa04LNT0253700.1 | 4 | 9906542 | A | G |
| Osa04LNT0253700.1 | 4 | 9906659 | A | C |
| Osa04LNT0253700.1 | 4 | 9907352 | C | T |
| Osa04LNT0253700.1 | 4 | 9908393 | C | T |
| Osa04LNT0253700.1 | 4 | 9909089 | G | A |
| Osa04LNT0253700.1 | 4 | 9910375 | A | G |
| Osa04LNT0253700.1 | 4 | 9910447 | T | C |
| Osa04LNT0253700.1 | 4 | 9910453 | A | G |
| Osa04LNT0253700.1 | 4 | 9911332 | A | T |
| Osa04LNT0253700.1 | 4 | 9912185 | A | C |
| Osa04LNT0253700.1 | 4 | 9912670 | A | G |
| Osa04LNT0253700.1 | 4 | 9913488 | T | G |
| Osa04LNT0253700.1 | 4 | 9913566 | G | T |
| Osa04LNT0253700.1 | 4 | 9913691 | A | G |
| Osa04LNT0253700.1 | 4 | 9916246 | G | A |
| Osa04LNT0253700.1 | 4 | 9914634 | G | A |
| Osa04LNT0253700.1 | 4 | 9889338 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0253700.1 | osa-miR5535 | Cleavage | 5.0 | 15.772 | 1 | 22 |
| Osa04LNT0253700.1 | osa-miR5543 | Translation | 4.0 | 14.28 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR5797 | Translation | 4.5 | 18.717 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR5801 | Cleavage | 4.5 | 16.115 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR5512b | Cleavage | 5.0 | 16.949 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR159a.2 | Translation | 4.0 | 20.407 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR168b | Cleavage | 4.0 | 21.075 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR1435 | Cleavage | 4.5 | 13.53 | 1 | 20 |
| Osa04LNT0253700.1 | osa-miR1435 | Cleavage | 5.0 | 22.626 | 1 | 20 |
| Osa04LNT0253700.1 | osa-miR1857-5p | Cleavage | 4.5 | 12.583 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR1863a | Translation | 5.0 | 13.773 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1863a | Translation | 5.0 | 24.213 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1882a | Cleavage | 4.0 | 13.585 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1882b | Cleavage | 4.0 | 13.585 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1882c | Cleavage | 4.0 | 13.585 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1882d | Cleavage | 4.0 | 13.585 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1882e-5p | Cleavage | 4.0 | 13.585 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1882f | Cleavage | 4.0 | 13.585 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1882g | Cleavage | 4.0 | 13.585 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1882h | Cleavage | 4.0 | 13.585 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR1320-3p | Cleavage | 4.5 | 17.276 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR2122 | Translation | 5.0 | 11.487 | 1 | 22 |
| Osa04LNT0253700.1 | osa-miR2864.2 | Cleavage | 4.5 | 10.616 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR2874 | Translation | 3.0 | 15.19 | 1 | 24 |
| Osa04LNT0253700.1 | osa-miR5484 | Translation | 4.5 | 13.743 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR5490 | Cleavage | 5.0 | 15.056 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR5512a | Cleavage | 5.0 | 16.949 | 1 | 21 |
| Osa04LNT0253700.1 | osa-miR5515 | Cleavage | 4.0 | 18.166 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0253700.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0253700.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0253700.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0253700.1 | 4 | qPEN-4 | Morphological trait | Panicle/flower | RG190 | RG908 |
| Osa04LNT0253700.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0253700.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0253700.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0253700.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0253700.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0253700.1 | 4 | qCER4-1 | Morphological trait | Shoot/Seedling | RG190 | RZ69 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)