Transcript

Sequence

>Osa04LNT0253900.1

CTCAGCAAATTATAAGCAAATTTATTTAGATTGTTTGCACTAATGTTGCACATTGATAATTGTACTTCTATGCCCGCAGCAACGCGCAGGGTATCAACTAGTTTTATAAGATTCTATCTACATGACCAAGCAAATAGATTATGATCACTTACTTTTATTTTTTGAAGCAAACTCTAAAATCACCTCCTGCTGCCCCGCAAGCTGCAAGCATTTCGCCCAAACACACGCCCCTATGTCTAGGCTTATTTGCCCAATCGCGCACCCTCTAGTAGGCTTCCGAGCATTATTTCCTTTCTTATCTCCTCTTCCACTCCCCCTCCATCATCAGTGGCTTCTTGTCGGTTCACCACTGCCATGCAAAAACACGGCGCAAATCCTTGGCCGCGGGCTCCGCCGTGACCAGGGGCTCCGCCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCCGCTTCGCCGCCTCCTCCCCCATCGACGGCTTCTCTCTCTCACTGACAGCTTCTCGGGTTACTCACTCTTTCAT

Coding Potentia

Explanation	CPC Score
noncoding	-1.17674

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0253900.1	4	10471353	G	A
Osa04LNT0253900.1	4	10472025	G	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0253900.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0253900.1	4	nan	Morphological trait	Root	RM261	RZ69
Osa04LNT0253900.1	4	nan	Morphological trait	Root	RM261	RZ69
Osa04LNT0253900.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0253900.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0253900.1	4	qCER4-1	Morphological trait	Shoot/Seedling	RG190	RZ69
Osa04LNT0253900.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0253900.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0253900.1	4	qPEN-4	Morphological trait	Panicle/flower	RG190	RG908
Osa04LNT0253900.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus