© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0254100.1
GGCCGCGAAGACATCGCTTCTCCTCCTCGCACGCTCATCCTCCTCCCCGCATGTACTGAAGCCGCATCCTCGCAGGAGCTCCTCCCCGCTGCCGCCGCTCCACTGAAAACTCGCCGAAGCCGCCGCCACTGCCACTACCTCCGTCGGATCCTGCTTCTTCCCCCATCGCCGCAGCCGTCCTCCTCGCTCGCTCCTCCTCCTCCCCGTGTGATTTAAGCCGCATCCTCGCCGGAGCTCCTCCACGCTGCCGCCGCTCCGCCGCATCCTAACCGGAGCAGCCGCCGCCGAATCCTACTTCTTCATCACCGCCGTGGCCGGAGCCGATCTCGGCCCCTTCCGCCGCCACCGACACCGCCGTGCACTCCACCGCTGGCCAGCACCGAGGTCGGCCCTCTTCCCCATCTGCCACTTCATCATCAGATCACCAATGTTTGCCCCATTGTTGAAAGCCTATAGTACGAGTAAGTCCCTCAAATCCTGTTTCTTTTCTTAATCTTCTCCGTACGTGTGGAAATTTTGATCTCTATGTCTGATGATCTTTGTTCTTGAGCCTTGGCTATGTTGGATAAATATTCAAGAAACCTAGATAGTGACTGCTGATACGATTCCTGTTATGTCCTGTCTGATGCTGAATCACGAGGGATTCTCCAAGAGGACGGGAAGCTGTCAAACAGCACCAGGCAGTCAAGTTGTAGAGATGGTGAAAAGTATGGAGAAGCTGCAGTCAAGTTGCTTGCTGCTAAGTTAGGACTAACAGGATCAATGGGTGCTTGCTGATAAAAGAATGCATATAAATAACAAATGGTGGAGGCGGATAAGGAGGCTGGTCAAGTCTAGCCTCCTACAACTATGTCACTGTACAACATCAAAAAAGGAGATTATGATATCTGAAAACTACAATCGTGAAATTTGAAAAATAAAGTGCATCAAGTTTGCCATGGAGATGGCAACTACCAACCCATAGTCATGCGGACATCAAGAAACATCATAGGAGCACCTCACCATCACATGGCTATGAGCAAGAGGGGTCTGCTAGACTGTTGTGAATTCCCAAAACAAAGCTGGATGCGCTAGACACCATCTGAAGTTGGTCCATGGCAACTCAATTTCTTCTAGCAAATACAGTATTATGAACAACAACTTTTCATGATTCTAACCTCCAATAATCTGAAGTTCCCAGTTTGATTATATAATCTAGGAACCAAATCATGAAGCTGGCGACATTGGTAAGAGGAAATGCTGTTGATCAATTTAATTTTGTATTACGCTACTGTAAGATGGCTTGATAGGAGTTTTGCAATACATACTGCACTACTGTAGGCACTGGCACAGTTTGAGAGCACAACATATAGAGTTTCCTTATTCAACACAAAGGCCATATCGTTTCATTCAACAAATGGGCTAATAATGCCATTACATTTGACGCATGCCACTACATTTCAGAACACAAATTCAGCCATTTGTTTCAGAACACTACATTCCTGAACAAAGCATACATATTTGTTTTGTGGTTTACAATGTGATGTTTATATCACAGGCTTTGTGTACTTGATGCTGGAAAACATTTATGACTTTATATATACTTCCTCAAACAATTTAAGATTCTCTTTCTTGATTTGTTTCTGCATGTAATGTGTTGCTGCTTAAGCCAAAGGAAGAGGAAAAACTTTTATATAAGCATTTCATTTCATATAGGTTCCCACATCTTTTCTAGGTACTATTGACACTCTAGAAAAGATTGGATGGCCTTCTAGGTAACATTGATACTCCTGTCCAAAAGGTGTTTGACGAATTTGGAAGGCCTTCGCTGATTGCTAAATATTTGGAAGGCCTTCGTTGTTTGCTGAAGATAGACCAAACCTGTTTACTTAAACAAGAAATAGATGGTTGTGGGGGAACATTCATCTTTACATTCTTTAGCTTTCCCTAATTTTTCAGTATCTTGTAGTACATGAAATTGCAATTCCTTTTACTTACTAGAAAGTAAATGTCATGCATTTGCAACTTTGTTATACAACAAATATATCAATAGGGGTTTGTGAGCAATGTTTTGAAAATTAGATTATATCATGTAAGGATTTCATATCTTTTTTTACCAAGACTATCTTACGAGTTTTTAGCCTGTATTTTGTGTTCAAATCTTGATGTTTTCATGCAGTCAATCTTGACAAGAATGCCACCATCCTTTTCTTTTTTGCCATGGATTTCATTGTTATGCTGTAATCTGGTGTGGAATATAGGAATGGCTACTTTGTACATTATGAATATACATGTACCTTTGTTGGCTAGAAAGTAGTGTGATTCAAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0254100.1 | 4 | 11255951 | T | C |
| Osa04LNT0254100.1 | 4 | 11256153 | A | C |
| Osa04LNT0254100.1 | 4 | 11256341 | A | G |
| Osa04LNT0254100.1 | 4 | 11257537 | C | T |
| Osa04LNT0254100.1 | 4 | 11257570 | A | G |
| Osa04LNT0254100.1 | 4 | 11258445 | T | G |
| Osa04LNT0254100.1 | 4 | 11258527 | A | G |
| Osa04LNT0254100.1 | 4 | 11259053 | A | T |
| Osa04LNT0254100.1 | 4 | 11259327 | T | C |
| Osa04LNT0254100.1 | 4 | 11259386 | A | G |
| Osa04LNT0254100.1 | 4 | 11259029 | C | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0254100.1 | osa-miR5530 | Cleavage | 5.0 | 19.047 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR5532 | Cleavage | 4.0 | 12.439 | 1 | 22 |
| Osa04LNT0254100.1 | osa-miR5798 | Cleavage | 5.0 | 13.511 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR5828 | Translation | 4.5 | 12.525 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR5835 | Cleavage | 5.0 | 12.85 | 1 | 24 |
| Osa04LNT0254100.1 | osa-miR5337b | Translation | 5.0 | 18.591 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR395f | Cleavage | 4.5 | 15.556 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR164c | Cleavage | 5.0 | 13.027 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR164c | Translation | 5.0 | 20.271 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR171i-5p | Cleavage | 4.5 | 9.628 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR418 | Cleavage | 5.0 | 13.945 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR1852 | Translation | 4.5 | 11.268 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR1879 | Cleavage | 4.5 | 14.508 | 1 | 24 |
| Osa04LNT0254100.1 | osa-miR5509 | Cleavage | 5.0 | 14.144 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR5513 | Translation | 4.5 | 15.434 | 1 | 21 |
| Osa04LNT0254100.1 | osa-miR5518 | Translation | 5.0 | 11.284 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0254100.1 | 4 | qPEN-4 | Morphological trait | Panicle/flower | RG190 | RG908 |
| Osa04LNT0254100.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0254100.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0254100.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0254100.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0254100.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0254100.1 | 4 | qCER4-1 | Morphological trait | Shoot/Seedling | RG190 | RZ69 |
| Osa04LNT0254100.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0254100.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0254100.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)