© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0254200.1
GCAGCAATAAAAAATTGTCTCGCCTTCCATTTATTTTCTTTGTACGGTTCACTTTACCTCCAGTTCCTCAGATCATCCTTAATGATTTAGAGGTTTGTTCATCTTCCCGAGCTTTACAAAACATACCATCAAGCCCCACAACCAGTTTCTTTTGAGATGGTTGCTGAATTACGTTGGGCTTGTCAAGTTAAAATTCTACCAGCTTTCACATGCACTAGAAGTTGTTAACACCTTACTCTAGCTACTGTGAACATCTCATGCATCTATCCTAACTCTAGTCTGACAACTAGAACAAACAGCCATCAAACTTTCTGAGTAGCAGGGTTCAAGCCCTTTCGCCGATGACGAGTAGCAACCAACTTCTGCTTTTTTGACGATGCTGGGTTGCAACCAATGGCATCCATATGCCGTTTCGAAAGGCTGCCGTTGCTGTTCATCCATGTAGCCATGGGAACTGCCGCCTTGCTATCTTCAGTATCATACCTGACGATGTTGGTCACAAGTGCATGAATTGACGTTTCAGCTCTTGGCACACCCTCCCTCTCCAGAATTGCATGCTGCCCTGCACGTGATCGATGCTCTGCAGCATGTTGCAACTCTTGCAGGACTAGACTTCTATCCCTGACAAAGCTGTCTTTTTGCTTCAGAAAATCAACAGGCCATTCAATGGAAGAGCTCGAACAGCCGCAACCATCACTAAAGTTGAATGTCAATAGCATGACAAACGGTCTATTCATTGATGTTTCTCTCTGCAAAGAAAATGGTTGCTCCTTTAGTACTACAGGCTTCATGTCAGGTCTTTCAGGAAAGGAAACCTCAACTGATCGAAGAAATGGCAAAGGTGCTCGCAAGCCATGAATGCTTGTTACTCGGAGAGTCCATCTCACGCATTTTTTTTTGACCGAGTTCCGGAGACTAATTTGAACAAAGTCAGTACGAATATATGGAGGGATACGCAGATTCATCATATACATAACCCCAGCAATGACCTTATCCACAAGTCCATGAATGACAAGGCTTGCCTTTTTATCCTTCGGAGTTGCCTGAAGATTTACAATAGCCACCCTCCCCCCATTCTTCAGTGACAACAGAGGCATATTACAAGCAGGAGTAATCTGCAGACTGCACAGTAGTGGAAATCAGAAAAGGATAGGGACAAAGAGACATCACCCGTTATTAACATAAAGTTGTTAAACAAAAATGTCAAATAGTTAGGGCATTGAAGAATGGTTACCGGTATATCAAGAGCATTACTAATGAATTCATATCAAAGCGATTTTGATCAGTTCATTAAGACAAGTCAAAGATCACTCCTTTGATTTTTTAACAAATCAAAAGCAAGCAGCTGCATAACATATTAATAACAGGGTTTGAGATAACAGAATCAGTACTGAAATTGGAACTTGGCTGGTTGGCAAGTATTAGGCGAAAACCATTTTAAGTTTTTTTTTTAAGATTCTCGAGAAAAATCTATTAGAAGCCTATATGTACCTATTCCAACTGAAGTTAATTTGAGTGAGTAGTAAAGCGTGAACTGCTCAGATTAGGAAAAAAAATGAACCAGCCCGATTGAAGGTTTGCAGGGTGCTAACCAGCAAGTTACCCTGGTTTTCTGAGCCCTGAATCTGGCTATGGACCAATCCAGATTACAGCTCCCACCTATAAAGCATTCCCAGATGACTCACTATGCTATGGATGCACAAACCAATTTACAATAGCCTTAAGAGACACTACAACACCGACCTACCACTCCTCATGGAATGATCCGTTTTTCAAAGTTGAGATGATTTAGTGAATGGAATACTTCTTGTCTTACAGCAATGAGTCCATGATGTCACATAGGCATTATGAGGAAATATTGAGTCTTGTGTTACATGTCCATATTTGTGCAACTGTAGAGTAGAATATACACATGCTTTTACTGCTTTTGCAGCATCATGGGGCTCACTCCTAGTGCCAAGCATTCCATAAAAGGAGCAGTATGCAAAACCCACACTTCCATGCATCTAGAGTAAATGGATCCCAATTATTGAAGAACTACATGGTAGTTTATGACATGTCATCAAGTGCATATTTGATCAGGTAATAATTTTCTAACATAAAGATAATACAAAGAAATATTTGTCTAGCCATTGATCTTCCAGTTCAAACATAGAAAAACTGTACCACATTTTAGTATAGAATTCAAAATTTAAGGTGTGTTTTGAATAGTAATCCTAAAGTTATCCTCACCCAGACAGCCAATTGCCCAACATAACTATGCCCCTGCTGTGGAGTTAACAGAAGTATCGAACATGTTCTTTCCATTTATTTTACAAAAATAAAAATAATAATAAAAGCAAACAGTCATCCTTTCTTAAAAAGTTAAAATGTTGTTGAGAAAGGAGGTAATGTATTGGATCAGGCAACGGTGGCAGGAACAATATGGACGTTCACCTGGCAGTCGTCCACCCACCTGATATGTGGTTTCCAGTACATATTTCCCCTGCTATGGTAGTCCAACTTGACATCCATAAATCCATATACTGGTGAACAAGGTCACTATGTGGTTCTATTGTGGTATTTGTGGGTCCAATCTTTTCTATAATAGTATGTTTATTAAACAGCTAGAACCAAGTTGTACATGGCAAATTTCCCTAATTTAAAAGTATTAGAAAAGCCATCTAAAAAAGCAATTACAGCTATTTGTTTGCCACTTTTTCTACACAATGATGTGACAGCTATTTGTTTGCCACTATTTACAATGATATCACATCACACCAGAATACCGCCATTCGCAAAAGTACGGAAGTACCAAATTCTTAAAATTAAGTTTGCAGGAGATAGAATCACAGAACTTGCGTGTAAACACACTAATTTCAGTAATGAAATAAAACCACGTGAAAGCAATTCTAGCTAGTGTGTACAGGTACCATGGCCAATACCTAGTTCCTAAACATAGGACAAGATCAGCTTTTTGACACTGCTCCTTGGCAGCATCCATCTCCTCAGGGGGTAAAGCATCCTCCCAATCAAGAACTGTGTCTTTTAATCTAGCTCCACAGTTCTTATCAGAACAACGCCTTGGAGTATCCTTCAGTCCTATCGTCTCAATTTCAAAATCACGAAGGTACTCCTTTTTACAGCTTGGGCAGATCTCCTTGAAAGAATTTCCATGCAATTCAGCCAGCTTCTCCCTTGGGAGGCCAGAGCGGAGATGTAAGCTATCAACATTCTGGCTTATGACAAACTTTAATCGTCCTGTTTTTTCCAATTCAACCAGTGCCATATGAGTCAAGGTTGGAACAGCTCGGTGAAACGGCAGTGATGCACCAGGAACACCTTTTCCTGAACGCTGCAGTGTCCACACGCCTTTGGGCCCTCGGAAGTCAGGTATGCCTGATGAAGTTGATATGCCTGCTCCAGTAAACACCACCAAATGCTTACTCTCTCGCACCATGACTGCAAGCTCTTCTATCTTCTTGTGGAGGAGTTCAGGAGAGTCGAAGATCTCAGGCATGCCGACATTTCCCACATCCTCTCGGTAGGATAGCTTCTCGGCATAGCCAAGTGACATCTCTCAATCAAGTAAGCTTCTCCCGAAAATTCAGGCGGATCTAACATAGGACATGGTGGTTCAGTTGAACCCCCAAACTGATGCGGCAGGGCGAACGACGGCGCCCCGTGCTCGCTCGCGGGATAGATGGGGATCGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0254200.1 | 4 | 11320635 | T | G |
| Osa04LNT0254200.1 | 4 | 11321847 | C | A |
| Osa04LNT0254200.1 | 4 | 11327828 | C | T |
| Osa04LNT0254200.1 | 4 | 11328299 | A | G |
| Osa04LNT0254200.1 | 4 | 11317709 | T | C |
| Osa04LNT0254200.1 | 4 | 11318583 | A | G |
| Osa04LNT0254200.1 | 4 | 11318805 | T | C |
| Osa04LNT0254200.1 | 4 | 11319423 | G | A |
| Osa04LNT0254200.1 | 4 | 11319685 | T | G |
| Osa04LNT0254200.1 | 4 | 11320400 | C | T |
| Osa04LNT0254200.1 | 4 | 11320475 | T | C |
| Osa04LNT0254200.1 | 4 | 11320590 | A | C |
| Osa04LNT0254200.1 | 4 | 11323496 | A | G |
| Osa04LNT0254200.1 | 4 | 11323703 | A | G |
| Osa04LNT0254200.1 | 4 | 11324747 | A | T |
| Osa04LNT0254200.1 | 4 | 11324967 | G | A |
| Osa04LNT0254200.1 | 4 | 11325272 | T | G |
| Osa04LNT0254200.1 | 4 | 11326210 | T | C |
| Osa04LNT0254200.1 | 4 | 11327025 | A | C |
| Osa04LNT0254200.1 | 4 | 11327050 | A | G |
| Osa04LNT0254200.1 | 4 | 11327142 | T | C |
| Osa04LNT0254200.1 | 4 | 11318671 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0254200.1 | osa-miR812p | Cleavage | 5.0 | 14.679 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR1861o | Cleavage | 4.5 | 13.196 | 1 | 22 |
| Osa04LNT0254200.1 | osa-miR162a | Cleavage | 5.0 | 18.96 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR395u | Translation | 5.0 | 10.097 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR159a.1 | Cleavage | 5.0 | 12.153 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR159b | Cleavage | 5.0 | 12.153 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR159c | Cleavage | 4.0 | 12.153 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR159d | Cleavage | 4.0 | 12.153 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR159e | Cleavage | 4.0 | 12.153 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR159f | Cleavage | 5.0 | 12.153 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR319a-3p.2-3p | Cleavage | 2.5 | 12.946 | 1 | 20 |
| Osa04LNT0254200.1 | osa-miR319b | Cleavage | 2.5 | 12.946 | 1 | 20 |
| Osa04LNT0254200.1 | osa-miR166l-5p | Cleavage | 4.5 | 13.708 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR166h-5p | Cleavage | 4.5 | 24.699 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR417 | Cleavage | 5.0 | 18.284 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR417 | Translation | 5.0 | 12.792 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR437 | Translation | 4.0 | 14.091 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR1438 | Cleavage | 4.5 | 10.885 | 1 | 22 |
| Osa04LNT0254200.1 | osa-miR1856 | Cleavage | 4.5 | 16.767 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR1861a | Cleavage | 4.5 | 13.196 | 1 | 22 |
| Osa04LNT0254200.1 | osa-miR812f | Cleavage | 5.0 | 14.664 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR812g | Cleavage | 4.0 | 15.637 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR812h | Cleavage | 4.0 | 15.637 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR812i | Cleavage | 4.0 | 15.637 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR812j | Cleavage | 4.0 | 15.637 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR2121a | Translation | 3.5 | 13.098 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR2121b | Translation | 3.5 | 13.098 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR2868 | Translation | 3.5 | 13.866 | 1 | 20 |
| Osa04LNT0254200.1 | osa-miR2874 | Cleavage | 3.5 | 12.148 | 1 | 24 |
| Osa04LNT0254200.1 | osa-miR2920 | Translation | 4.0 | 16.393 | 1 | 23 |
| Osa04LNT0254200.1 | osa-miR395x | Cleavage | 4.5 | 12.07 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR5080 | Cleavage | 4.0 | 13.102 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR5080 | Cleavage | 5.0 | 22.65 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR5490 | Cleavage | 4.5 | 9.475 | 1 | 21 |
| Osa04LNT0254200.1 | osa-miR5501 | Cleavage | 4.0 | 19.87 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0254200.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0254200.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0254200.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0254200.1 | 4 | nan | Morphological trait | Panicle/flower | RG788 | RZ69 |
| Osa04LNT0254200.1 | 4 | qPEN-4 | Morphological trait | Panicle/flower | RG190 | RG908 |
| Osa04LNT0254200.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0254200.1 | 4 | nan | Morphological trait | Root | RZ69 | RG449 |
| Osa04LNT0254200.1 | 4 | nan | Morphological trait | Root | RZ69 | RG449 |
| Osa04LNT0254200.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0254200.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)