© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0254900.1
GGTATGAAATCTGCTTCCGTGCTTGCTGTGCACGAATATTACATGGATGGTTGAAAGCAGTGTTTCTTGTTATCCAACTGGCTTCGCAGCAATCGCATTTTCTAGACAGTAACAACTGTACACTACAATATTCTAAACAATACTGCCGAACATTTTGTATCTCGTCAGTAAGGTCACCGAATACTCTGCATATAGCACCGAAAGCTTCTGCGTCCATGAGTCTCATTACCAAAAACTCCTAGTACACGCATCAATCACTTTCCTGAGAAGAGAGTATCCGCTTCAGAGCACGGGGTAGGCTCAGCACAATCTCCGCAAACGCTTCTGGCAAACTCAAGGTCTTCAGCGCATCCTCGGCGTAGGGAAGGCGGAACGGTACTAGTTGAGCAGATGCTGAGCGACTAGCTCTGCGCTCAGTTACTGATATTCCCCGCGAAGAGCGAAGTGGCCAAGCCAGGACCCTGGCCTGACTTGGCAGGGTGAACAATAGATCTGAGTATCGGATACTGACTGTAACCTTGCACTCAAAATCCTCCATTACAAATTCTATCAAATTGTAAGAGAGACTGTGGAACAGTTCTCCAATTTGGTTCCCATATAGTTCCTTGATAAGCCGAACCTGCTCCCTCCTGTCAACATAAGACTGCAAAATCTCTTCAAGATGATCAATAAATTTAATAGCATTAGATGATAGAAATTCACTTTCTACTTCTCGTATTGGCAGAAAGAAAGGTAAGGTGTGCTCAATCACAGTCATCTTTTCAAGGAATGACTTGCTTTCCAAAACACAATGATAAATTTCACAAGGTTCTCCAGCAAAATAAGTCTCATACTGTATACCAATTCTCGCACCATCCAAACAATAGATAACCTTGTTTTTTACTCTATATGTAGTCCTTGACTGGAATTGAGGATCTGCTGGAACATTTGCTTGGTTAGCCATGGCCTTCCTATCAGCCTCCATATGGACCTTTTCACGGATGGTTGCCAGCAAACCATCGTTCCACTGCTCATCATCTATTGGGATCTCTTCAGTTTGGGCAGTTCGTGCAGCCTCAAATTCTCTCTGTAGCCGCTCAAAAATCAGTTTATCAGAATCCCGTGAGAGGCGCTCTTTCAAATCTTCATGCCTTTTGAGAACATTCGACACTGCAAAACAGAAGTTCAAAATTATGCCTAAACTGCTTTCTTGGATTCCTTAATAACAGAAAGCCCCCAAGAAAAGAATTGTTTCCAACTAAAGAAAGAGGGAACTATTACGCCTCGCCCGAGTGGTCTCAAGTCTTGTATCTTCATCCCTTATGTAAGTCATTTCTTGTACTGAATGTTGACACCTCCTTAATTGCTCAAAATGCGGGATGTGGCGGAAGCAGCAGCAGGGACAACGGCGGCGTCCCCCTCTGCTCGCGAGATGGAGATCGCCGACCCTGATCTGCTCGCGGGATGGAGATCGGCGCAGGGCGCGAGGAGCGGAGACGAGACGGCCAAAACGCAAGAGGGGACGGCGGAGGGGCTTGAGAGAGGAGAAAATTGATATTGTGCCATCCTCAAA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0254900.1 | 4 | 12221200 | T | C |
| Osa04LNT0254900.1 | 4 | 12221134 | A | G |
| Osa04LNT0254900.1 | 4 | 12221340 | A | G |
| Osa04LNT0254900.1 | 4 | 12222485 | G | C |
| Osa04LNT0254900.1 | 4 | 12222994 | C | T |
| Osa04LNT0254900.1 | 4 | 12223483 | A | T |
| Osa04LNT0254900.1 | 4 | 12224161 | C | T |
| Osa04LNT0254900.1 | 4 | 12224308 | T | C |
| Osa04LNT0254900.1 | 4 | 12224677 | G | A |
| Osa04LNT0254900.1 | 4 | 12225252 | G | C |
| Osa04LNT0254900.1 | 4 | 12226312 | C | T |
| Osa04LNT0254900.1 | 4 | 12227668 | G | A |
| Osa04LNT0254900.1 | 4 | 12227713 | G | A |
| Osa04LNT0254900.1 | 4 | 12227777 | A | G |
| Osa04LNT0254900.1 | 4 | 12227832 | A | G |
| Osa04LNT0254900.1 | 4 | 12227912 | C | T |
| Osa04LNT0254900.1 | 4 | 12228592 | A | G |
| Osa04LNT0254900.1 | 4 | 12228624 | G | C |
| Osa04LNT0254900.1 | 4 | 12224207 | T | G |
| Osa04LNT0254900.1 | 4 | 12225464 | G | A |
| Osa04LNT0254900.1 | 4 | 12226636 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa04LNT0254900.1 | DTM_#DNAt_MULE_japo_Os0229 | Chr4 | - | 12225407 | 12225944 | 537 |
| Osa04LNT0254900.1 | DTM_#DNAt_MULE_japo_Os1104 | Chr4 | - | 12228726 | 12229558 | 28 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0254900.1 | osa-miR5824 | Translation | 4.5 | 17.692 | 1 | 24 |
| Osa04LNT0254900.1 | osa-miR156f-3p | Translation | 4.5 | 14.034 | 1 | 22 |
| Osa04LNT0254900.1 | osa-miR156h-3p | Translation | 4.5 | 14.034 | 1 | 22 |
| Osa04LNT0254900.1 | osa-miR396c-5p | Cleavage | 5.0 | 15.034 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR156l-3p | Translation | 4.5 | 14.034 | 1 | 22 |
| Osa04LNT0254900.1 | osa-miR159f | Cleavage | 4.5 | 16.259 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR168b | Translation | 4.0 | 19.186 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR396e-5p | Cleavage | 4.0 | 14.868 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR2055 | Cleavage | 3.5 | 18.064 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR2055 | Cleavage | 4.0 | 12.748 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR396g | Cleavage | 4.0 | 14.868 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR396h | Cleavage | 4.0 | 14.868 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR396d | Cleavage | 4.0 | 14.868 | 1 | 21 |
| Osa04LNT0254900.1 | osa-miR5816 | Cleavage | 5.0 | 16.458 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0254900.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0254900.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0254900.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0254900.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0254900.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0254900.1 | 4 | nan | Morphological trait | Panicle/flower | RG788 | RZ69 |
| Osa04LNT0254900.1 | 4 | qPEN-4 | Morphological trait | Panicle/flower | RG190 | RG908 |
| Osa04LNT0254900.1 | 4 | nan | Morphological trait | Root | RZ69 | RG449 |
| Osa04LNT0254900.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0254900.1 | 4 | nan | Morphological trait | Root | RZ69 | RG449 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)