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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0255000.1

CCCCCCTCCCCAGGGTTTCAAATCACTTTCACAAATCTCGTCCAAGAAACAAAATCCAATCACAGACATTGTAAACTTGCAACATAAAAGCACTGGATTCAAATCCATAGCAAGTTAACATCAATAAACATGTAAACTTAAGAAAAAACAACATCGTCATCGCCAGCGAACTCCTCTGTTGCATGCGGTGGCCGCCACCGCCTCCCTCCCCGCTCCGGCAGGATCTAGGAGGGCAGCGAGCCATTGATGCGGCCGGCGCTAGTCGTCGCCGTCCTGCAGTAGTCTTCGTTGTCGCGGCCGACGCCCTCCGCCCGTGCTACCGCCGACGCCCCTCCTCTCCACCGGATCTAGGAGGGGAGGGGTTGAGGAGAGGGGCAGCGATGCAGCTGGTGGTAGTCGTCGTCGCGTGCAGTAGTCGTCGTCGTCGTCGCTCGGTAGGCGCCGTCGTCATCGCTTGCTGTAGGCGTCGTCGTCGACGCGCGGTAGGCGCCGTCCCCTCCGCCCGTGCCGCCACAGACGCCATTCGCCTCCGCTGCCACCGACCCCCTATGCCCGCGCCGCCGCCGATGCCCCCTCCATCGGAAGGAAGGAAGGGGAGGGGAGGGAAGGAATGGGGGAGCCGGAGGGAAACGAGAGAGAGAGAGAGGAGGGAATGAGTGGTGGGGAGAGGATA

Coding Potentia
Explanation CPC Score
noncoding -1.15315
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0255000.1 4 12932089 T C
Osa04LNT0255000.1 4 12932093 T C
Osa04LNT0255000.1 4 12932240 T C
Osa04LNT0255000.1 4 12932250 G A
Osa04LNT0255000.1 4 12932268 T C
Osa04LNT0255000.1 4 12932320 T C
Osa04LNT0255000.1 4 12932418 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0255000.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0255000.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0255000.1 4 spp4-2 Morphological trait Panicle/flower RG449 CDO456
Osa04LNT0255000.1 4 nan Morphological trait Panicle/flower RG788 RZ69
Osa04LNT0255000.1 4 qPEN-4 Morphological trait Panicle/flower RG190 RG908
Osa04LNT0255000.1 4 An8-glum Morphological trait Panicle/flower nan nan
Osa04LNT0255000.1 4 nan Morphological trait Root RZ69 RG449
Osa04LNT0255000.1 4 nan Morphological trait Root RZ69 RG449
Osa04LNT0255000.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0255000.1 4 qSNP-4a Morphological trait Panicle/flower RM401 RM335
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus