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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0256600.1

CATACGTCACGGTCTCGATTGATTCCTCCTCCTCCACCACCGGACAGTGATGGCGAGGAGGCCGAAAGCTGCGGCTCACCAATGCCCGGCCACAGGATCCGGTGGCGTGACCGCATGACTGCTAGGACGACTAGATCCAGCGGTGACGGCGATGGAAAAGAAGGCTAGATCCACAAATCCCTCCTTTTGTCTCCTTTCCAATCAGCACCCTGAAGCAGTGGCATCGACAAGGCACCAAAGTCCGCCGGTGGGAGCCCTTGCTCCGTCACCAGCGACTACAGTAGCGTTACCAGTGCCAGCTTCAAGGGCTCCACTCAGCTTGGTCCTCCACTTGTCGCGAGCCCCACAGTCGTGTTTGACGACCTCACTATAGCCTCCGCATCTGTCGCCTGAGCGGAGGCCATGGAGGAGGCTCTTGGTGCCACCCTGCCACCCATCACCACCACCTCTCAGTGTGTTCTCCTCTGCTGATTTTGTTGACATATAAGCAACGGAAGAAGTCCTCGCGAGTTTAAAATGCACTGTCAAGTGTCAAGTCATGGAGGCAAGTGTACCACAGAACCAGC

Coding Potentia
Explanation CPC Score
noncoding -1.10973
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0256600.1 4 14738410 T C
Osa04LNT0256600.1 4 14738489 A G
Osa04LNT0256600.1 4 14738566 T C
Osa04LNT0256600.1 4 14738787 G A
Osa04LNT0256600.1 4 14738879 C T
Osa04LNT0256600.1 4 14739083 A G
Osa04LNT0256600.1 4 14739845 A G
Osa04LNT0256600.1 4 14740247 C G
Osa04LNT0256600.1 4 14740274 T A
Osa04LNT0256600.1 4 14742122 T A
Osa04LNT0256600.1 4 14742396 G A
Osa04LNT0256600.1 4 14742438 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa04LNT0256600.1 DTM_#DNAt_MULE_japo_Os3333 Chr4 + 14740418 14741857 1439
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0256600.1 4 nan Morphological trait Root RZ69 RG449
Osa04LNT0256600.1 4 nan Morphological trait Root RZ69 RG449
Osa04LNT0256600.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0256600.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0256600.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0256600.1 4 nan Morphological trait Panicle/flower RG788 RZ69
Osa04LNT0256600.1 4 spp4-2 Morphological trait Panicle/flower RG449 CDO456
Osa04LNT0256600.1 4 An8-glum Morphological trait Panicle/flower nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa04LNT0256600.1 4 14739083 Panicle-type 10.09310913 +