© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0023700.1
GCATTGGGTACAGCTAAATAATAACTGAGCGAGCCAATTACATGTTACATTAATCTTCAGAAAAAAAAGATGTTACATCATATGATACTATACATAAAATTCATTCTCTTAAAATATGATCCACATAAATGTAGAGAGTCAGCCTGATGTCTAGTTGCCACCGCCTATATGTCTATAGCATGAATCAGCAAAAGAGTTTAGCAATTTCATACAAGTGAAAAGACCACAAGAGAAAATGATTGTATAGTATGTCACCCCTGCTAGTTTACAGCCTTGCATGTTAATCATTGTCATCCTGGTAAACAAATAAACAATGCTATCCAGATTTATGGAAAATTTTGCATTTCCTTGTATATATAATGGACATGCATGGACAAACAAAAATCGACACCTACATGACCTACCGCATACAAGACGCGAGTTCCATGCCCCACATCCAGACAGCTAACAGGAGTACCTTTGTATACAAATCCCATTAAACTGTTCAGATTCTGCCCAGCTCTTACTTTATGGCTACATTCTTGCTATGCCATCCCTTGCAACAGCAAAACATCTCATGGGAAAACAAAATTGCAGAATAAGATCAATTGATCAAAGGAACAATCTGAACCCACCACAACAAAACCATCGCTAGCATATCTCCTCCCTTCTGTTTGTTCTAATGTGGGCGTACATCTGCAAAATCATTTTTTACCTGCACAAGTTTCACAGAACCATCCCCACCGCACGAGACAAAACCATTAGGTAAGACTTGGATGTCTGTTACAGCAGCCCTAACAACACCACCAAAGCCCCTAGAAGTTGGTTGAAAAAAGGTGTGCCGCTCGTGCAACTTTTGCCAATGGAAGACTAGCTGAGAACTTTTGGCATCCCAAAGCTTCACATCTCCATCTTTGCTTCCAGTTAAGAACAAACTGGTATTTGGGATGGTTGATACACTGCTGACACTACCTGTATGCGCCTTTGGTATATGCCAGATCATCCCACTGTTGCTAACACCGTTGGAAGTTCCAGACTTAGTGTCATGCATTGAAGTTGAAGATGCCTTAACATCATGCTCGTTGGAACTTCTGTGATGCTTAGTCTTTCCAGTAGAGATGAACCGAAAATCATGCAAAGTTACATCTCCACTTTTCCCACCAGTTACAATCAGCGGTGAGATAGATCCACAGCCTATATTTCTATCGAACACAGAAAGAGAACGAACTCCTCCTTCATGACACATAATAGAAGTTTGACAAGTGGATGGTGGCGCCAATGTATCCCAAATAACAACATTTGCACCATTTGAACTGCATCCAGCTGCAGCAAGAACTGATCCACTTGCAGTCAGAAATGCGACATCCGATGCGTGGGTGTTAAAGCACAGGGATGACTCGGTAGGATGCACATTGCTTCTTCCACCCACCTCAACTTGCCATGTACAAACTGTACCATCTAATGCAGCAGTAGCAAACCGCTGCCCATAATAATCAAATTGAACAGCTGATATGGAAGCAAGGGCATAAGGTGGTGGGATATTAGCAGCAGGGAGAACACCATAGGTAGCCATGGCACTGTCTTTGCCAAACTCCCATAAATAAACATGAGTATTGCTTGACCCAACTAGCAACAATGGCAAAGATGGGTGGCGAGACAATGCTCTTGAATGGATGTTCTCGAGTGTTGCTGGAGGATCAACGAAATCTTCGAATTCGTCAGGTTCCCCCCACCCAAATCCAGATGCGCCGATACCAGCATAACCTGGAATTCCAAATGCTCCACCACCAGTTAAGTCCCTTCCAGGTTTTGCCAATGAACCTAAACTAATAGTTGGTCCACCTGAACTAAGATGGGATCCTTTTCTTCTGCCAAGACCAACACTAGGAGAAAAAGAAGTTGAAGTAGGTGTAGATTCGCAACCAGCCCACCCATCCAAGGGCCAATCAGATCCTGCCCATATATACTCTGCTAAATTTTTGTTATCTTGCTTGTCATTCCAGTTGAAGAAAACAAGGCCCTTCCGATTGGTGGCGATAGCACCTTGTTGCTCATTGATAGAGTTGAGACATATTGCCTCAAGAAGTTCACCATTTCTCCTTACAAGTTCTCTGGGTCTTTCAAAATCTGCAATTAAACCTTTCCTTTTAGGTTCAAGAGTGACTTCCACACCATAAGGGGTATTGTCAATTGATCTCTGTATTTTCTCGTTGTTCTTGGAACTTAAATTGTCACGATTTTCTTCACTTCTTTGAGCAAAATTATTTTCAGACTCAACTAATGTAGCTTCTGTCATAGCCTTCCAGGATCGTGTTAAACTAATGCTGTTTAAAGGAAAGCAATTCATTTCTTCATCCACAAAAGCAGTGCAGATATCCACAGGATGAGCAGATATTTCCCACAAAGTATCAAAAAAGACTTCGATGTTCTCACTGTTAGCAAGCTGAAAAATACTTGAGAACTGCTCATGGCTATTGTTGTTGGACCTTGGCTGAGATAACCAGAAAAGCACACTTGAATTTGACTTCTTCAGTACTTTCTCTCTGAAAAATGAAGCATGCAATTTTACTAACAAAGATGACACAAAATGGAGGGAGCCCATCAAAAACTTTGCAACAACTGAAGATATGAGGTCCTTGAATTCCACATCACTTGCACTAGTTTCAAGTTCAATTCTCTCTTTTTCAACGAACTCAGTCAAAAACTGTTTCATGAAAGATGACAATCGAGTCCACAAAGAAATACCTATCAAATGCCATTTTTCATCAATTGGAAGACTCTGATTCTCACTTCTTTCTTGTTGTATATTACACAACAAACCATTGACTGTGCCCCCATCTGTGCCAATTGATACACCATGAATTTTATCATGTACAGCTTGCAGCAACTGATCTAATAGTACTTGAAAGGACTCTCTGTTGACACAAGCACCTATAACTGGACTGGTCATGGTAAGCAATGCTTTTATGTCATGACATAACCAAGAAAAGGAAAACTCCATGTTGTATTCAAGGAGGTCCATAACTGTAAGCATAGCTGATGTACGACCTAACACAAAAGTTCTAGTATTGTCTTGTTTCAGAAGTAACCTGCTAGTACTCAGGAAGTGTGATAAACTTGCCATAATGTACTTGCCCACTTTAATTGTGCATGGAGTAGTATTAGCGCAGTCCATGTTCAGAGCAGAACATATGAAGCAGCAGGAGACAACATATTGTGTAAGAAACTTGCAGCTCTCCTTACTTGACACCATAAACATATAATCAATTGGATGGAAAGCACAACCTTCAAGACCACAAGTACCGGTTCCAACATCTGATGATATACTACCCCATAACAACACGTACGCGAGAAAAAATATACCATCGTTGCAACAAAAGGTAAGGATCTTCTCAGCTATATCAGCAACTTGAAGTGAGAATTTTTTATCGAATACTTGTAGCGCTGCCTTGACATCACGTGAAAGTTCATTCACGTGATTACTGTTGAATTCTTGCAGGACCTTATCTTTAGTTAGTGGTAGGCTGCACCGTGAACAGAGTGACTGATTTCTCAGCACGCGCGACAGATATTTTGAAGCCATAGTTATTTTCAGGTTTGATTCAACATCACTGACTACAGATGCTGAGAGCCAGTTGGACGAAGCATGGAAAGGGTTCAATATTCCATAAACAATCTTCTTGTCTCCGCCATCCAGTGAGGTGTTGTCCTTTCCCTCTATGCCCGAGTTACAACATAGGTATTCAAGTGCTTCAAGAGGCAGTCCACATCTGTTCAAGGCGCATGAAGCCATTGCTAATGAAAGCTTAGATAAATTTGCAGATTGAGCTTCACCAACACAGTTTCTGAAACTACTTTTTGTCGCAATGATTGCACAATACTGACCCACTCCAGGGTCTGCAAAGACATTTGTATCACCGGGAATGCTGGATTCTTCAATCAGTGACTTGAGGTGGCAATCAAGTAATTGATTCACAGACTGAGAGTAGTTCCCTAACATCCATTCAAGTAGGCTTGAAAGCCAGTGGTCTCCTTTATCAACTGCTTCAGGGAGCAGTACATTAGCAATGAGATTACGCTCCAAGGGCCCTCCAGATCCCTCAAGAAGTCGACAAATTACAATAGCAAGTTGTTCATCTTGAAGGTTCTTTGCACAAACACTGATGGCTGAGGATGTATCACCTCCAAGGAGGAAAAATGCTATAGCAAGCTCCCATTGATGCCTTCCCATTAGCACATATGCATTTTTCAGAGCAGCAGATTTGTGTTTTTCTTCCTGGAAGTTCCTGGAGAGAAACTCATAGAGACGTTTATCCTTTTCATCTCTGCTAATCTTGAATAGGCCAACTAATACTTTTGTTCTATTTAATGCTATATAGAGAAGAGCACAGTCCTTTGGGTCCTTGCTTTTAAGATATTGCAGCCTTGCCAACTTCTCCATCTTGGTTCTTAACTGGGACACGTTGGTGTACCATAACCCCATACCAAGGTTTCGCATCTCAGACCAACTTGGTTCTGCAGGAAGAACAGAATTAAGTAGATCATCCTGACAATCAGACTGTAAGGCCCACGCGATAGAAGCAGAATCAACATGGAAGACTTCGGCACTGGATGGATCTTCAGATCTCCTAAGTGCATATAGGCGTTCGAACTGCACAGCAACCCAGAACCTTCTCCCTGCTTCATCAAGGCTTTTATAGGGAGATGCATGGCTCTGATCAGTAATTTTACCCAAAAGATCAGAAAGTGCAACTATCTGGGTTCTCTCCATGTCACTTATTGTTGATATGCTAACATTCGTAGCAAGGAGCTTATTTATTTCTGAACTTTGAGATGTGCTAGTGGTGGTGTTGATATCCTCCATCCGAGGATATGAATTTGATGGTGATAGCAAACTAAAGGCTGTGCTACGTTGATTGTCACCCCAAAGTAACCCTCTATTAGATATGTCATTAGATGTCATATCGGTGAAGCTTTCAGATAAAGGGCATTCAGGAATATTATGGCATGATTTACCACAGAAACTGCACTCCAACAAGGTGTTTGATATTTTATTTGCTTGCATGGATTGAACAAGATGCTGCAGAACAGTGTTTGCCCGTTTCCATTGACCTGAATAAAGAGACTGAATAAGTGCTCTCGGGTGATATGATGCCAGAGGTCCACTCATTTTGGCAGCTATATCCAACAAGTTCCATAGATCATTAGAACAGTGAGCACTGTGTTTCTGTAGTAACATTGTGTTGCTGTAATTTTCTGATAAACTGAATC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0023700.1 | 1 | 20721356 | A | G |
| Osa01LNT0023700.1 | 1 | 20717293 | A | G |
| Osa01LNT0023700.1 | 1 | 20717450 | A | G |
| Osa01LNT0023700.1 | 1 | 20718898 | T | C |
| Osa01LNT0023700.1 | 1 | 20719294 | G | A |
| Osa01LNT0023700.1 | 1 | 20719325 | A | G |
| Osa01LNT0023700.1 | 1 | 20719790 | A | T |
| Osa01LNT0023700.1 | 1 | 20720147 | A | G |
| Osa01LNT0023700.1 | 1 | 20721339 | C | T |
| Osa01LNT0023700.1 | 1 | 20721446 | G | A |
| Osa01LNT0023700.1 | 1 | 20722477 | T | C |
| Osa01LNT0023700.1 | 1 | 20722989 | A | G |
| Osa01LNT0023700.1 | 1 | 20723049 | G | A |
| Osa01LNT0023700.1 | 1 | 20723302 | A | G |
| Osa01LNT0023700.1 | 1 | 20723609 | T | C |
| Osa01LNT0023700.1 | 1 | 20724549 | G | A |
| Osa01LNT0023700.1 | 1 | 20725163 | T | C |
| Osa01LNT0023700.1 | 1 | 20725379 | T | C |
| Osa01LNT0023700.1 | 1 | 20725485 | C | T |
| Osa01LNT0023700.1 | 1 | 20725517 | T | C |
| Osa01LNT0023700.1 | 1 | 20725729 | C | T |
| Osa01LNT0023700.1 | 1 | 20725987 | C | T |
| Osa01LNT0023700.1 | 1 | 20726046 | T | C |
| Osa01LNT0023700.1 | 1 | 20726123 | C | T |
| Osa01LNT0023700.1 | 1 | 20726933 | G | A |
| Osa01LNT0023700.1 | 1 | 20722698 | A | G |
| Osa01LNT0023700.1 | 1 | 20719698 | C | T |
| Osa01LNT0023700.1 | 1 | 20722171 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0023700.1 | osa-miR5527 | Cleavage | 4.5 | 15.527 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR5530 | Cleavage | 5.0 | 22.227 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR5794 | Translation | 5.0 | 20.747 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR5807 | Cleavage | 3.0 | 20.143 | 1 | 24 |
| Osa01LNT0023700.1 | osa-miR5837.1 | Cleavage | 5.0 | 16.427 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR6245 | Translation | 5.0 | 13.542 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR1440b | Cleavage | 4.0 | 10.846 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR6251 | Translation | 4.5 | 14.576 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR397a | Cleavage | 4.5 | 17.135 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR168a-5p | Cleavage | 4.0 | 13.824 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR444a-3p.1 | Cleavage | 4.0 | 18.228 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR535-5p | Cleavage | 5.0 | 13.364 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR529b | Cleavage | 5.0 | 12.638 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR1426 | Translation | 4.0 | 12.249 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR444d.1 | Cleavage | 4.0 | 18.228 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR1869 | Cleavage | 4.0 | 16.638 | 1 | 24 |
| Osa01LNT0023700.1 | osa-miR2093-3p | Translation | 5.0 | 23.37 | 1 | 20 |
| Osa01LNT0023700.1 | osa-miR2863a | Translation | 5.0 | 19.613 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR2866 | Translation | 4.5 | 20.425 | 1 | 20 |
| Osa01LNT0023700.1 | osa-miR2866 | Translation | 5.0 | 23.971 | 1 | 20 |
| Osa01LNT0023700.1 | osa-miR5147 | Cleavage | 5.0 | 14.722 | 1 | 21 |
| Osa01LNT0023700.1 | osa-miR5340 | Cleavage | 3.0 | 22.592 | 1 | 23 |
| Osa01LNT0023700.1 | osa-miR5505 | Cleavage | 4.5 | 20.813 | 1 | 22 |
| Osa01LNT0023700.1 | osa-miR6252 | Translation | 5.0 | 12.541 | 1 | 23 |
| Osa01LNT0023700.1 | osa-miR2863a | Cleavage | 5.0 | 15.843 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0023700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0023700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0023700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0023700.1 | 1 | qNVB-1-1 | Morphological trait | Culm/leaf | R2159 | C178 |
| Osa01LNT0023700.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0023700.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RM129 | RM5 |
| Osa01LNT0023700.1 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0023700.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0023700.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)