© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0256900.1
GTCATGTATTAATTACAATCCATTATATGTCCTAGCTAGCTACGATTTCGACGTAGTAGTAGTCGCTGCTAGCTCAGAAGCTAAGGACCGGTGAATTGTGTTTCCGTCGTAGTAGAATTCACCCTTGGGATCAAGGATTTCTTCGTTGATGAATCCCATGAGTTGTTCTTGAACCACTGCGATAAATTCCTTGTGTGTGGTCAGGTTATCCCTCATGCGAATAAAATCGAGCTCTCTTGTGGTGATGATTTGGTCTGCAAGGCAGTGGCAATACTCACACACGTAGTAGCCGCACAAGTTAGTTCCCTGCTTTTGCTTTGCGCAAGGAAATTTGAACCTCCGCCTAAGTCTTTCTCTCCAGTTGCCGCGGACCAAATGACGTAACCGATACCAAGCCCTGTCTATAAGTTCGAAAACCTTGTCAAACGTAGACTCTTTTTTATCCATTGAGTCATATACATTGACGGTGCAGGCCGACAGGTCGAAGAATAAAAGCACCCAGTGGAATTCTGTGTTGTACGGTAACAGTATGAACGTCTTGTAATGCTGCGCCTTCAGGAGATGGACGAGATTGTCCTCTGTTTCCTGTTTCCTGCGGATATTGGTCGAGCATTGCAACGTTTACTCTCCGAGGGTCGATGAATCCAGTATCGAAAACCCTCCGCCATCGGGCCCTTTGAATCTCCATTAAAGTCCAGCAACTCATAATAGAGACGTCGAGGGCGTCCAGCTGGTATACTTCGTAGATTCCCTTGAAATTGATCCAGAGAATATCATCTCCTTGCAAGAAGTCCAAGTCCCTGATCCTCGCTCCGATCATCTCTCTACCGGTGGCGCTCATCTCCACGTACAGCTGATGGAACCTGTACATTTGTGTGGGTAGGGACTGCACCAGCTTGGGCTTGACAAGCGATTTACCGAGTTCGTACATGTATTTCAATTCCGCCTTTTCTATTGGTTCAACTCCTAGCAATTGATCCGTAGTTAGACCGGTGTCAATAATAAATTCTTCTATCGTCATGTCTTTCCCGGTCACCAACGGCTCGATCTCCTGGTTTGGTTGCTCTCCAAGCTGAGGGACTGGTTTAGACTTTCCAGAAGATGCTTTCTTCAGCGTTCGCTCATAGTCCGATAGCTTGATGGCCTCCTTGACAGGTGCAGACATACCCCTGAAGAAGTTCATGACACTGGGGTCTATAGGAATCTTCTTTTCTGGACTTCGAGGCTTGAATTGTCTCTTGACTTCTGATGCAACGTGTCACACCCCGAATGTGAGGCTGGTGTTAGTTGATTGAGTCAGCCCATTCCCAGAGAGTTGATTATAGTGCACAAGATCAGTGACAAAGGCGCCTATTGTTGATCCACCATCAGCATAGGTCGCGATGAATGGACAAAGTAAGCTTGTGTTGCATTCTGGCTGCACATCCCTATCGGGCGAAGTGCAGAACATATCATCACATTTCACCACTTTTTAACTTACTGAGCTCCTAGGGTCATATAATGTCAGCTTTTTCAATATATCGCTCTTGCGAGGGCATTGCTTGCAGGGGATGCAGTTAACCCAAAATGCACTGCTGCCAGTGTCCACCTGCACATAGTATTCCATTGCGGGTGTCCCAATCCCTATCTCCGTGTAGTATAGTCCTGTGCTGGATGTGCTGATGCCACCAAGGCCACCAAGTGAGAAGTCCGCAGCCACAAGGCGACTAAGATGGCGGTTCCTATCGTGGGTTTGTAATGCACCTATGTCACTCCCCTTACACCCACCGCCCATGATAGAGAATTTGCGGCGCACCTGGAATAACCCAATGGCCACGGTACCACGAGTAGAGGATGCTACCAATAGGGCCGAAAGGATTGCTGATAGAAACAAAGGAGCCATCTCTTCAGCAAAGTATGTACCATTCTTTTCCTTTATGTTTTTATGAAGCTTTAAACAGTAATTCTTGGTTCGTCATCTGGTCCTCATCCATCGCAGTGGACTGTTCTATGAGTTTTAATATGAAATGGGGTACGAACATGGAGCCAAAAAATGCGGGGAGCCATGAACAGGAAACATCTAGTGGAAGAAGTCAGCAATTGTTCGCTGGGAGAGTCAGGGAAAATAGGAAACTACGTGGTTTTTGCGGTTGAGAGTGGAATTGTGCATGGGGCTACGGGCATTATGCAGGCCATCCATTATGTCTGCAATTTTTGCACCTATTTTGAGAAAGGCTCCCAGGTCTAAGCTTCTTATCTTTAATTATGGTTATGAAAATGCCATGCATGGCTCTCTTTCTTTTTGGGAAAGAAACTGCTAATCTATGATAACTAAAGAGTAGTGATTGGCTGCCTAAACTAAAATCTAAACGTATTACTGCGTAGTCTATGAAGTTAGAAAACTAATCCCAAAAAAACTATGATCCTGGCAATCTGACTACCTCAACTGCTAGTTGGAGAGTGGCTTGGCTACCTGGACTGCTCAATTCTGTTCAGACCATCAGCCTAGTTACCATAGACTTGATGAGAAAAAATAATTTTCTATGTCACACCATGCCCCAAAAATTCACAAACCAGAATTCCAAGCAGAACGTGCATTAAACCACTATCCAGGAACAGCTAGGGTAGTTGAACTAAGCATGGCTAAGCAATTCCTAATCCAACATCTAGTCATGTTACATCCCAAGTTTACAAAGGAATAAGGTACAAAAATAATAGGGCTGAGAACAGTAGGTACAACATCCCATTTAGTAACATTATAAAACAATGCATAACTTAAAGGAAAACATAGAGCATTTGCAATATGGGATCAATATATTCAAGTGACAAGGATGACTTGCCTTGCTCTGCGGCTAGAGGGACCTTGGCGACTATCTTGAAATACACCGGAGCGTTGGGAGAGCCGAAATCTTGTTGGATTAAGCCTTCAACATCTTGATCCTATACATGCACCATGTGTCTGTCTTAGTCCGTCCATATGATTCAGCCAGGCAATTAGCTTGGCTGATGGATACGGATCAATTCGAAGCATAATGTCACGGATCTTGCTTATCCAACAACTTGTTTGTGTTTCTTCGATTTGTCCTATGTAAGATGCTAAGCCAACAACATCAGATAAATATGTTTTGCTGTATACTCTTTTGGAAAGACTCTCAATGGTTGAAAATCTAAAGGTTTGTTCTAGTTTTGGTTTGTTTTCTAGGGTTTTGATCTCCTGAACTTTGGCAGTGTTTTGAGAAGTTGAGAATTTTGTCATTGTGAACTGGACGATATTCTGCTACTGAAGAAACCTTGAAATTAGATATCATGGACACTGATCCTTCTTGAATGCCCTGAACCTATTGACCTCTTCATCAATCAGTATCATGTCAAGGCTAATAAGCTCGTTGCTGTTAGGATTTATGGCAACCCAAAGTCTAATTACCCATTGTTAACAGCTTTCCATGTTTCCTTTTCATTGTTAACAGCTTGAAGCATATCACATGCCATTGTAGTTATCCTTTGTGTATTACAGATGCGGCGGAGACGGATGCAAGTATGCTCCTTTTTGCCAACGCAACGACAAATATGCGATAGTTGGGAAAACGGATGAACTGTGGAACAAACATACTGATCCCAGAGTTCCAGTCGGAGACGGTTCGCTCGTTGATAAAAGTCATCGCCGCGAGAACCGATGATCTCCAACTCGCGCTCGCCGACTATCCCGCGAACGGAGAGACGGAGAGCTGGATGCGGCGCGTTGAAGATAAGGTCGACCAATGCTTCTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0256900.1 | 4 | 15386261 | T | C |
| Osa04LNT0256900.1 | 4 | 15386689 | A | G |
| Osa04LNT0256900.1 | 4 | 15388482 | A | G |
| Osa04LNT0256900.1 | 4 | 15388639 | T | G |
| Osa04LNT0256900.1 | 4 | 15389035 | T | C |
| Osa04LNT0256900.1 | 4 | 15389153 | C | T |
| Osa04LNT0256900.1 | 4 | 15389164 | T | A |
| Osa04LNT0256900.1 | 4 | 15389229 | G | A |
| Osa04LNT0256900.1 | 4 | 15389292 | G | A |
| Osa04LNT0256900.1 | 4 | 15389588 | C | A |
| Osa04LNT0256900.1 | 4 | 15390119 | A | G |
| Osa04LNT0256900.1 | 4 | 15390131 | A | G |
| Osa04LNT0256900.1 | 4 | 15390247 | T | A |
| Osa04LNT0256900.1 | 4 | 15390445 | T | C |
| Osa04LNT0256900.1 | 4 | 15390630 | A | G |
| Osa04LNT0256900.1 | 4 | 15391611 | C | T |
| Osa04LNT0256900.1 | 4 | 15391826 | C | T |
| Osa04LNT0256900.1 | 4 | 15391859 | A | G |
| Osa04LNT0256900.1 | 4 | 15392121 | A | C |
| Osa04LNT0256900.1 | 4 | 15392368 | T | A |
| Osa04LNT0256900.1 | 4 | 15392628 | A | G |
| Osa04LNT0256900.1 | 4 | 15393133 | A | G |
| Osa04LNT0256900.1 | 4 | 15393195 | G | A |
| Osa04LNT0256900.1 | 4 | 15393255 | G | A |
| Osa04LNT0256900.1 | 4 | 15393704 | C | T |
| Osa04LNT0256900.1 | 4 | 15393846 | G | A |
| Osa04LNT0256900.1 | 4 | 15394256 | A | G |
| Osa04LNT0256900.1 | 4 | 15394368 | T | C |
| Osa04LNT0256900.1 | 4 | 15394617 | A | G |
| Osa04LNT0256900.1 | 4 | 15395750 | G | A |
| Osa04LNT0256900.1 | 4 | 15396060 | G | A |
| Osa04LNT0256900.1 | 4 | 15396302 | G | T |
| Osa04LNT0256900.1 | 4 | 15396632 | C | T |
| Osa04LNT0256900.1 | 4 | 15390462 | T | G |
| Osa04LNT0256900.1 | 4 | 15396740 | A | G |
| Osa04LNT0256900.1 | 4 | 15397108 | C | A |
| Osa04LNT0256900.1 | 4 | 15398458 | T | A |
| Osa04LNT0256900.1 | 4 | 15395955 | T | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0256900.1 | osa-miR5797 | Cleavage | 5.0 | 19.971 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR6251 | Translation | 4.0 | 22.31 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR7692-3p | Cleavage | 4.5 | 17.083 | 1 | 24 |
| Osa04LNT0256900.1 | osa-miR5079b | Cleavage | 5.0 | 8.041 | 1 | 22 |
| Osa04LNT0256900.1 | osa-miR166a-5p | Cleavage | 3.5 | 18.069 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR166a-5p | Translation | 5.0 | 14.069 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR166c-5p | Cleavage | 5.0 | 18.069 | 1 | 20 |
| Osa04LNT0256900.1 | osa-miR166e-5p | Cleavage | 3.5 | 18.069 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR166e-5p | Translation | 5.0 | 14.069 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR164c | Cleavage | 3.5 | 14.799 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR164c | Translation | 4.5 | 14.095 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR164e | Cleavage | 4.5 | 14.799 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR169f.2 | Cleavage | 5.0 | 20.944 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR415 | Cleavage | 5.0 | 14.337 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR396e-3p | Cleavage | 4.5 | 18.857 | 1 | 24 |
| Osa04LNT0256900.1 | osa-miR1858a | Translation | 4.5 | 17.701 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR1858b | Translation | 4.5 | 17.701 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR2097-3p | Translation | 4.5 | 24.468 | 1 | 22 |
| Osa04LNT0256900.1 | osa-miR2877 | Cleavage | 5.0 | 22.547 | 1 | 24 |
| Osa04LNT0256900.1 | osa-miR2877 | Cleavage | 5.0 | 19.272 | 1 | 24 |
| Osa04LNT0256900.1 | osa-miR2929 | Translation | 5.0 | 20.56 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR5079a | Cleavage | 5.0 | 8.041 | 1 | 22 |
| Osa04LNT0256900.1 | osa-miR5153 | Cleavage | 5.0 | 20.298 | 1 | 24 |
| Osa04LNT0256900.1 | osa-miR5499 | Translation | 4.5 | 21.089 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR5499 | Translation | 5.0 | 22.863 | 1 | 21 |
| Osa04LNT0256900.1 | osa-miR2275c | Cleavage | 4.0 | 15.643 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0256900.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0256900.1 | 4 | nan | Morphological trait | Panicle/flower | RG788 | RZ69 |
| Osa04LNT0256900.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0256900.1 | 4 | nan | Morphological trait | Root | RZ69 | RG449 |
| Osa04LNT0256900.1 | 4 | nan | Morphological trait | Root | RZ69 | RG449 |
| Osa04LNT0256900.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0256900.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0256900.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)