© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0258300.1
TAGAGGTGGGGTTCGAATAACATATAAGAACTGATTAACAGATTGACTGTAGAATGGTATAACAATATTTAAAGAACATATTCATAGGTCTGAGAAACTATCGAAGCCAAGTATACACGGGCAAAGCACATAGACGTATCAGTCATGCATATATATAGCAATATCATGTTATGATCCACACGTGCGCGCACAAAATGAGGCACATCACACGGTAAATATTCTAGTAGTTCAAGATGCACCCTAGAGAGAAGGAAAGTGAATGATTGAGCCAAAACGCTGTTGTTTCCCAACGTCAAGAGGAAAGAAGGGTGTACTTCTATTGTTGTACACAAAACAGGGAAATCAGGCACATTTCATAGGTTGGACTGCATGGAGTCTGAATAAGCAGTGAATCAATAAAAGCATCATTAACTGAGGAAGAAAGTCATTCAGTAAACAGTGGGCAGTAGTTGTACATGAAACCAAAAGGGAAATGCTTGCAGTTAGTAGAAGCATGTAAAACCATCGAAAATTTCTTTGTAGACAACATTTTGAGTGCTTTCTGCATGTTCAGGAGGGTTGTTATCTATCAGAACACGCAAACCATCTGGGGATGTCACTCGTGAGAAAGCAACATAGAGCTGACCGTGTGAAAAAACCGGGCTAGGTAGATAAACTCCAACCCTACTAAGTGTCTGCCCTTGTCTCTTATTTATAGTCATTGCATATGAAACTCGAACTGGAAATTGGCGACGCTTAATCTTAAAGGGCCACCTTTTGTCGGTAGATGTAGTTACTATCCTTGGTATATATGCCTTACATCCTTTAGCTTTTCCTATGATTATTTCTCCTTCTATTATACAGTGAGTTAGCTGAGTTACTATGAGTCTTGTTCCATTGCAAAGGCCCTTTGATGGGTTCAAATTGCGGAGCAACATTATAGGAACCCTACTTTTAATTGCAAGCAATGATCTGGCAAGCCGCTCATTTATATTGTGTTGAGGAACTCCACTGGATAAAAGGCCTCAAGTGTAGCACGATTAGCTGTGCTATCATCTATGATGTCTGAGCTATAATATGACATTTGTTCTGTTGGCAACTGAGATATCATGTGGGAGTTGATTTCTGCAGCTATGTCATTAGTTGGGGCAAGGATTGCTCGCTCACAGAAATAAGCAACCATATCTGAAATGCTTGATTCATTGTACACAAAAGATACCAGTGATGAAATATTTCTTGATTCAGGTGGCAAAAGCAAGTATCCTGGAATTTTGATGTAACATGTATCATGTCTATCAGTAGGAGAGTTATCAGGCAATGTTCCTTCTCCAATATGAAGAAGCCATTTTGAGAATTCTTTAAGGTGATCTCGCTGAGTATCAGACAACAACGGTGATTGAAGCCTCATATTCTCAGTTAGATGCAGAATAATGCAGTGGGACCACAAATAAGAGCGGGTAATAGATGCACTTAAGATCTCATATTTCTATGCATGAGGCAGTACTGGAAGTGTTTGCCTAAAATCCCCTCCGAAAACAACTGTGAGGCCTCCAAATTGCTTCTTAGCTAGGGATGGATCATTTGAGGATAGGATATCCCTTAGTGTTCTATCCAGAGCTTCAAAACAATGTCTATGATTGACAGGTGCCTCATCCCATATAACTAAAGATGTTTGTTGTATCAATTGGGCTAGATGAGTTTTTTTTTTTTGATAGCATAGAGTGAATGTTCTTGTATATCTAATGGTATTTTGAAGCGGGAATGCGGTGTGCGACCACCTGGCAGAAGAAGTGCAGCAATGCTAGATGATGCAACAGCCAAAGCAATTTTTCCTTGAGCTCTAACAGCATTAAGCAAAGCATTCCAAAGAAATGTCTTCCCGGTACCACCATAGCCATGCACAAAGAATGTGTGACCAATGCAATTGTTGACTGATTGAAGGACAACATCATAAACATGTTTTTGATTCAGATTCAATTGATTGAGTTGTTCAGCTGCTTCTACTGATATCCTATCAATATCATAAGCTTGTTCATCTGTTAAAAGTCTATTGCCAACTGCACATGCACTGGTAAGAATGGGCTCAGGCAAGTTAAAGTGTGGTAAGCTATATCCAGAATTTCTAAGCAACTTGTCAATTTCAGCAAGAACAAATGATCTAACATGTTGTGTAAAAGGTGTAGAATGGTATGTCATACTATGCCCAATGCGATGCATGTAGTCCTCACCCATTCTAGAAAAATGTTCTTCAAATAAAGCCAATGGATCTGTAACATTGCAAAAGAGGAGAAGTGTGACAAACAACTCACGGAGCTGGTATGGAAGAGCCCAATGCGCTGCATCAACTATAGCGGACAACCACTCACGATCATCACCTAGGAGACCAGGAGCCTGGCAAGCAGCCTGGAATGTTGGATACTGTTGGCCTTCAATTGTTCTGATCTCTGAGTACGACCTTGCCACCTTCACTATAGCAACATACGAAGATAGTAGGAATCCCCCTGGTTAGGGCCTACATTGGCTAGTCTTCCGACGTTACCAGTACCACGTCGATAATCCCAATACTTTCCATCAGCATGCCAAGTGAAGTGCTCTGGGAACTCTGCATATGTGTAGCACACAGCCTCAGGATAGGTCTTGTTAGCTTCAAACCAGGCAGTGAGCTTTGTAATTTGATTCCATGGGTTCTGCAATACTTGTTCTAGGCTGTCATCCTCATTGTATACTACACTGTTTCCGAGTGGTAGATGGACAGGAAGACGCTCAACAGAAGGGTTAGTGTGGTGAATTTCAAACTGGAGCAAGCGCCAAGCTGCATCATTGGGAGCTATACATCTGCACTCTAGGTAATCTTGGATCTCATTAACACCTTTGGTACAGGTAGATGATTCACCGGATGCTCTTTTACGTTGGAGACCAACCTTTGAACAATCAAAACCTTTGGTAAAATACTTGAATAAATATTTTTCCATCCCATCACGGCTAACTCTCTCTACATTTATGTGTGCTTGGTACTTCACACATAAATCCACATTATGCAGGAGAACAAATGCATTATCAACAGCAACACCATTCTTTTTGGTAGATATTCTATTCTTTGGTCGAGCATATCTAACATGTCCATTTTGTAAGATTGTTGTCTTCTCACAATATTCTTTTGGATAGTTCTTAGAGCATTCGCCGTTAACCATGCAAGCACATGATGGATGTCCCTCACCACAAGGACCATGAATCATAAATGCAGATACAGCATCAAAACCAATTGGATCGACAGAAGGATCAGGTAATTGTGCTGATATGAACTTATCAACCTCATCAGCAGTCAATGCACCAGTTTTTTTTAGCCATAAAATAATATGGACATGTGGAAGACCACGTTTCTAAAATTCGATAATGTATACAACTGCAGTAATTGGACCAAAAAATTCATTCTTTGTGATATCATCGATGAAGAGATGCAGCTTCATATGAAACACACGATCAACAATATCAGGCTGTTCGATGAATGTTGCCCAGGAATTAGAGCCAAAGCCTAAGTAATTTTTGTCTATAAAGGGTTCGATGTGAAAGTGATAAATAAATCAGGACAACCATACTTTCGACAAAGAGCAACACAATCAAGGTAGTTTTGGTATAGATAGCGTGGCCCTCCAACATAGGAAGAAGGTTTTATAATTCTTTGGCCTGCTTCAGACCCTTCTATAATGCCTCTATGTATTGTATCATGAATTTCTTTGAGAGGAGCAGTTCTATATTTCTGTTGAAATGATTTAGTCCTAAAGTGACTCAACTGAGATTCTTCCATGCAACAATATGCGTCAATAACATAGGCTTGTGTACCTCTTTTGCAACGCGTTAGGGTGTTGAAATCATCACCTCTATCATGAAGCCTATAGGCATAATATTCTACCTCTGTGACACGCTTCCGTTTAATCCCTGCTGATCTTCGACACTGTCTATATGCAATGTTTTGATGATACCCATCTTCTCCATAAGGAAATAAAATTGGGTACTGCATCGCCATAAATTTACAGTGATCTTCTTTAACTTTCCTTAGATTGCCAGCCTTGTCTTCTACCATCAGGTCACGTCCAATATCACTTGTACCTAAGTCACCAACAACTAATCCAACAACCTCTGATGCTACTGGAGCATTAAATATATCGCCATGCTTGTCAGGAGATCCAAACAATCTTATAAAATAGTGGTCATCGGGTGCACCTGCCCTAGAAAGCCTATCACGGGCAACCCTAAATAACTTGACAATTGGGTTATGGGCATCAAACATTTGCATGAGAGCAGCTACAATTTCTTCGTTAGGTTGGAAGGCTCTATTTTTATAGGTGCCAACACGCAATCTATTCATAAGCTCATTTTGAGTGTCAAATATGTACAGCTGAGCATATTCTGGTCGTTTATCCCTTTTTGGTAGGAGCGACCCAATACGATGGCAGAGCTGGCCACTTCTCTTGAATGTATATGGACCACGACCATCATTGATAGAATCAATCACATTCACCCCCATTGATGTAAAAGCAAACATAGAGTTGTAGTACCTTATATTCTCACAGAAATGAGCTGATTTAGCTCTATCCACCGCAGTTAGCAGACTATGCAAAGGCTCTGGAGGTGGCTTGTAGGAAGGCAAGATAACACTTCCTCCTTTGCAGCACTTGTTGTATAACGGTCTTGTTGTGTGACGCCGTCGGTCGATGCGCTCCTCATACCAAAATAATGCGCCACAATAACAACATGTGTGACTTGGTGGACCAAGGTTTAATGGTGAGAAAACAGAGCATCGAGACCAGCATCGAGATTGAACATTTACAATCGAGCAGTTTGATGAGCAGTCATGATCGAACAGTCGAGATAACATCATGATTGAGCATCACATACGAATCGTGGGAATGACCATTTGTAGGGATAGTGGTATGAGAAGACGATGCATCTTTATCATATATGGAAGATGATGAATGTGCCAACCGTTGTCGCAATACCCTAGAACGCTCTGACATATATGCTTTACGTTTTTTACGTGATTGAGCAGCCATGGCGGAATCTGGGCGAGGAAAATCTGTAAGTTGAGTATACGAACGGCGTCGAACAGGCCGGTTAGATCTGAAATTGAAGGCTGTGGGGAAGTCATTCGCGTGGCTTGATGGTGATCCATGTAACTCACCATCATTAGTCTCAGCAAGTTGAGTACACAAACGGCGTCGAACAGGCCGGTTAGATCTGAAATTGAAGGCTGTGGGGAAGTCATCGGCATCGTTTGATAGCGATTCATGTAGCTCACCATCATTAATCTCTAATATTGGTCGCTTACGCTTAAGGCGTGCACAAACCAGAGATTTTCCATCAGGCATAGACATAATAGCGATTCGACGCCCAAGAAAACCCTAGAGGGAGAGGGCAAGACGGGGTGCCGCGCGGGTGTGGGGAGACGGCGGCGGTCTCTAGGAAGAAGCGACGGCGGCCGCCGATGGCCTCGCCTGGAAGCGACGACGGCGAGCGATGCCAGCTACTTGCCCGAGGTCGAGATGAAAGGGGAACGGCGGCGCCGTCGGAGGCGACGACGCGGTGGAGAGAATGGGGAATCGGCTGGTTCACGGGTGCCCCTTTTTTTCTCTTCTGCCTGTCGTGAGCCTGGGTGGTGGGCTCAATTGACC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0258300.1 | 4 | 16864912 | T | G |
| Osa04LNT0258300.1 | 4 | 16870214 | T | A |
| Osa04LNT0258300.1 | 4 | 16870426 | C | T |
| Osa04LNT0258300.1 | 4 | 16872286 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0258300.1 | osa-miR5532 | Translation | 4.0 | 12.528 | 1 | 22 |
| Osa04LNT0258300.1 | osa-miR5817 | Cleavage | 4.0 | 16.867 | 1 | 24 |
| Osa04LNT0258300.1 | osa-miR1319b | Cleavage | 5.0 | 15.142 | 1 | 24 |
| Osa04LNT0258300.1 | osa-miR5828 | Translation | 5.0 | 16.873 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR1437b-5p | Cleavage | 5.0 | 16.682 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR7693-5p | Cleavage | 5.0 | 18.431 | 1 | 24 |
| Osa04LNT0258300.1 | osa-miR160a-3p | Translation | 4.5 | 15.565 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR160b-3p | Translation | 4.5 | 15.565 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR160d-3p | Translation | 5.0 | 15.565 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR171a | Translation | 4.5 | 16.784 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR171b | Translation | 5.0 | 16.784 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR171c-3p | Translation | 5.0 | 16.784 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR171d-3p | Translation | 5.0 | 16.784 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR171e-5p | Cleavage | 4.5 | 13.795 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR171e-3p | Translation | 5.0 | 16.784 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR171f-3p | Translation | 5.0 | 16.784 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR171i-3p | Translation | 4.5 | 16.784 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR437 | Cleavage | 4.5 | 9.917 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR816 | Translation | 4.5 | 19.588 | 1 | 20 |
| Osa04LNT0258300.1 | osa-miR1871 | Translation | 5.0 | 19.624 | 1 | 24 |
| Osa04LNT0258300.1 | osa-miR1882e-3p | Translation | 4.5 | 9.013 | 1 | 24 |
| Osa04LNT0258300.1 | osa-miR2094-5p | Translation | 5.0 | 18.654 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR2095-3p | Cleavage | 2.5 | 21.276 | 1 | 20 |
| Osa04LNT0258300.1 | osa-miR2864.1 | Translation | 5.0 | 19.373 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR2863b | Cleavage | 5.0 | 19.252 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR1863c | Cleavage | 4.5 | 13.795 | 1 | 24 |
| Osa04LNT0258300.1 | osa-miR2929 | Translation | 4.5 | 13.835 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR2929 | Cleavage | 4.5 | 15.768 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR2931 | Translation | 3.5 | 16.682 | 1 | 20 |
| Osa04LNT0258300.1 | osa-miR5083 | Cleavage | 5.0 | 16.234 | 1 | 20 |
| Osa04LNT0258300.1 | osa-miR5489 | Translation | 5.0 | 18.004 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR5489 | Cleavage | 4.0 | 15.468 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR5496 | Cleavage | 5.0 | 22.614 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR5499 | Cleavage | 4.5 | 9.527 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR5499 | Cleavage | 4.0 | 15.389 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR5515 | Translation | 4.5 | 17.5 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR5522 | Cleavage | 4.0 | 15.671 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR5524 | Cleavage | 5.0 | 16.625 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR160e-3p | Cleavage | 5.0 | 13.105 | 1 | 21 |
| Osa04LNT0258300.1 | osa-miR1871 | Cleavage | 5.0 | 19.426 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0258300.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0258300.1 | 4 | gwt4a | Morphological trait | Seed | RG788 | RG190 |
| Osa04LNT0258300.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0258300.1 | 4 | nan | Morphological trait | Panicle/flower | RG788 | RZ69 |
| Osa04LNT0258300.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0258300.1 | 4 | nan | Morphological trait | Root | RZ69 | RG449 |
| Osa04LNT0258300.1 | 4 | nan | Morphological trait | Root | RZ69 | RG449 |
| Osa04LNT0258300.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)