Transcript

Sequence

>Osa04LNT0259500.1

GTGGCTTTAATTTATTAATTTTTAATTTCGATGCAGTGAACACCGTAAGGATGCAGGTTCAGACTATACTCTGTACCATTGTCACAGTAAAACTTCATGAACCCAACCGGGTAATATTCATATGAAATGAATGAAAAACTAAGTTTACACACGAGATGGTCTTTTTTTTTGGAGCAATCCAAAGCTAAACAATTTAACTGAACTAATAATCAAAAACGATGAATCTGTATTGAACTGAACAACTTCGAGTGGAAAAGTAAAGGATTGATGGTCTTCGAATCTCACGTAGTAGTCCTTTTTAGCATGTGTGTAGGCGTCGTATACACCGAGCTTACATGATCAGTCCAAGACCTGGTTGAGGATGGCCATCTGCTTGGCGATGGCCATCTCGACCTCGCCCTCGTCCTCGTCCTCCCCGACGCCGCCGCGGCGGCGGAGCTCGCCGGCGACGTCGTCCATGAACCTCGCGGCCTCCTCGTCGGCGGCCGCCTGGGAGCCGATGAGCGCGAGGTCGACGAGCCAGGCGGCGCAGTACGACACCATCATGGCGGCGCCGAAGCAGAGGAACC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.797572

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0259500.1	4	18507004	A	C
Osa04LNT0259500.1	4	18507439	G	A
Osa04LNT0259500.1	4	18507494	T	C
Osa04LNT0259500.1	4	18507660	T	C
Osa04LNT0259500.1	4	18507762	A	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0259500.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0259500.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0259500.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69
Osa04LNT0259500.1	4	qNOT4-2	Resistance or Tolerance	Drought tolerance	RG449	RG788
Osa04LNT0259500.1	4	qFRP4-1	Physiological trait	Source activity	RG449	RG788
Osa04LNT0259500.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0259500.1	4	nan	Morphological trait	Root	RG449	RG788
Osa04LNT0259500.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus