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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0260600.1

CTACAGTTTATGAGTTTAGTGAGCCTCTCCACGATTAATTATTGTACATAATTATACATATCGAACAACATAAACAAACAAACAAACAAATTTACATGAACATACTGTAATTAATTATTATACAGCCCACACAGCACACAACACAAACACCATGGATTAATTACAAACACATCGATCAGCCTCGTGTTTAATTTATTCCGATTTCCGAGGCAAGGAAAGGAGCAGAGGTAGTAGCAAGCAAGGAAATTAAGCAGCAGAGATGATCGTGATCGACGCCGACCGCCGGCCGGCCATCACATGATGGAGCAGGCGTTGGCGTTGTCCTCGGTGTAGCACCACGGCGGCGGCGGGCAGACGGGCGGCGGCGGCCACACCTGCGGCGGCCACGGCCTGATGCCGCAGCCGCAGTTCCCGTGGCCCCCCGAGCACCCGCACGGCGGCGGCGGCGGCGGCGCCGGCTTGCAGACGCACACGAAGGCGTGCGAGCACCCGCACGGCTTCGGCGGCTCCGGCTCCTTCGGTGGCTCCGGCGGCGGCTTCGGCGGCTCAGGCTTTGGGCAGCACCACTGCCCGGCGTACGGGTACGGCACCGGGTAAGGGTACGGCACCAGCTTGCACTCCGGCTTCGGCGGCGGCTTCTCCGGCGGCGGCTTCGGCGGCTCCTCCGGCTTGCACGGCGGCGGCTTCTCGCATGGCTTGGGCTTCTCGCAGTGACAGGGCTTGGGCTTCTCGCAGTGGCAGGGCTTGGGCTTGGGCTTGGGCTTCTCGCAGCTGCAGCAATGGCAGGGCTTGGGCTTGCAGTCCTCCGGAGGCTTCTCGCACGGCGGCGGCTTGCACGGCGGCGGCGGCTGCGGCAGCGGCGGCGGCCAGACGTCGACGATGAGGATCTCCTTGATGATCTTGCCGGCCTTGCACCAGATCTTCTTGCACAGCTTCTCCGGGTCGAACTTCCCGCGCACGATCACCCTGTTGTTCTTCACGTCGTACTCCACCTTCTCGATGCAGTACTCCTCTTCAAGGCAGCCCAGGACCTTCCTGATCTTGGCATCGCAGCGGCAGCATTGCAGGTCCACCAAGATGACCAATATACCCATCTGCACACAAGAAAAACAAAAAACAAAAAAAAATGCAGATAGACAGGCTTTGGTCAGTTAACAGAAAAAAAAAAAGAGGTGCTTATTGAGCATCTTATATAGTTCTCTTTTCTCATAACAGAGTTAGGGGCCCCTTGCAATTAACAGGCATGCTCTTTACAAATTTCTCAGGAAAAAGTGCAATTCCCGTGGAATTCAGAAAGAAGATATATATCATGCCTTAATTATAAAAAAAAGTATTATGGAAGTTGAAGTCCTGTAACGAAAATTCTCTTTTCAAAATAGCAAAGAAACCAGAATTCTCTTTTGAACAGAGCAAAGATTAGCACACCAAAGTACTACATTAAGATTTAAAATACTGAGCTCACCTGTCAAATTTGCCGAATGTTACCAATGAGCAGTAGAGGAAAGCATGGAGAATCGAAGCATGAATAATGGAGGCGATGCAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.743147
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0260600.1 4 19835234 A C
Osa04LNT0260600.1 4 19835333 T C
Osa04LNT0260600.1 4 19835486 G A
Osa04LNT0260600.1 4 19836880 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0260600.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0260600.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0260600.1 4 nan Morphological trait Panicle/flower RG788 RZ69
Osa04LNT0260600.1 4 qNOT4-2 Resistance or Tolerance Drought tolerance RG449 RG788
Osa04LNT0260600.1 4 qFRP4-1 Physiological trait Source activity RG449 RG788
Osa04LNT0260600.1 4 An8-glum Morphological trait Panicle/flower nan nan
Osa04LNT0260600.1 4 nan Morphological trait Root RG449 RG788
Osa04LNT0260600.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus