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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0261300.1

GGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGCGTAGTTCCCGACAAAGAAAAGCAGCAGGAAGGTCGCGACCACAATCAGGACTATCATTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCGCAGAGTCCGCGAACTGATCCGCCATGGCTGACCGGGACCAAACACCTGCAACTCTCTCCTTTTTTAGATATTTTATTTAGCCTACGGCAGCTGCTGCACTATTCCGCTGTTCGTGGCCGATCGATCGTCGGGTCTCGCCCTCCCGCTTACGGGATTCGGTTAAGGAGTTCGATGATCTGATAGGATTGGAAGGTGCGAGTGAGGAATACTACTGAAATTTTTGGGGGAGTTCTGAGAGACGGCAGGACGAGGATTCGAGCGAGGAG

Coding Potentia
Explanation CPC Score
noncoding -1.06667
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0261300.1 4 20224812 A C
Osa04LNT0261300.1 4 20224800 T C
Osa04LNT0261300.1 4 20226143 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0261300.1 osa-miR168a-5p Translation 4.5 21.155 1 21
Osa04LNT0261300.1 osa-miR1427 Translation 4.5 20.66 1 21
Osa04LNT0261300.1 osa-miR1861h Cleavage 5.0 18.403 1 22
Osa04LNT0261300.1 osa-miR1861j Cleavage 5.0 18.403 1 22
Osa04LNT0261300.1 osa-miR2865 Translation 5.0 13.674 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0261300.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0261300.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0261300.1 4 nan Morphological trait Panicle/flower RG788 RZ69
Osa04LNT0261300.1 4 qNOT4-2 Resistance or Tolerance Drought tolerance RG449 RG788
Osa04LNT0261300.1 4 qFRP4-1 Physiological trait Source activity RG449 RG788
Osa04LNT0261300.1 4 nan Morphological trait Root RG449 RG788
Osa04LNT0261300.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0261300.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus