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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0261600.1

CCGAGACCCCGCGTCCCCGCCGGCTGCCGGCGCACTCACGGCGGCGATGCCCGTCGCGGCGGGGGAGGCCATGCCTCCGCTTCCGCCTCTGCCCTGACGGACCCCCTCGCTCCCCTCCTCCAGAATCCTCTTGCGTCCACGAGACCCGCCGCGATCTCGAATTCGCCGCTCCACCCATGACCTACCTGGCGACGTCCCAATCGTTCCAGTTTCCGATGATCGATTGCTCCCGCAACCGAAGGTTGGGGGGAGAGGAAGCTGCAGGGTTACTCGAGGCGTGATCGCTGACGGGGGCCGCACCGCCGCGTGGAGCAGCCGCTCCGACTCCGAGCCATACTTGGTACATTCCCCATATTAGGATGTTGCGTGGCTGGACATCTTCAAGGTTCCCATTGGAGTCTAGAATGTTGCGCATTCCTTGTGTTGTTTGACTCTTTAATAGGACTGCTGCTTCATGCGTGTAATCATGCCAAGGAGTGGGGATGAACAGAAGAAAGGAGTACTCTCATATTCCGGCGGGCTGTGAAGAAGTGGGGTTAAAGCACCAAAGATTAAGACGGTATCCAGGATTCGACACGTCGGTGAGGCTACCTTCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAATACTTGATGATGAATGTATACATGTTCTTTTAAGAGAACAAATTACAGCGACAAGGATTGGAAGGTCCATGGACGTCAAAAGGTAGGAACTTGCAGTGGTTGTCTACCGGAGGGTGTTTCGCTAGGAGCCATCTATGGCCTCAGCGGGGATTAATTACTTGTAAAATAATGATATATATTTACCAGTGGAGGTGCTCCCTCAGGTGAGGGGCGGCAGGCACAGACCAGTGTGAAGAAAGACCTCAGGTCGCCGCCCTGAACCTCGACTCGCGGCTTGGACACGACCGCCGA

Coding Potentia
Explanation CPC Score
noncoding -1.41067
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0261600.1 4 20310179 C T
Osa04LNT0261600.1 4 20310929 C T
Osa04LNT0261600.1 4 20311564 G A
Osa04LNT0261600.1 4 20312423 C T
Osa04LNT0261600.1 4 20312691 G T
Osa04LNT0261600.1 4 20312894 A G
Osa04LNT0261600.1 4 20313072 T C
Osa04LNT0261600.1 4 20313084 A G
Osa04LNT0261600.1 4 20313154 T C
Osa04LNT0261600.1 4 20313175 C T
Osa04LNT0261600.1 4 20313375 T C
Osa04LNT0261600.1 4 20313867 A G
Osa04LNT0261600.1 4 20313919 A C
Osa04LNT0261600.1 4 20313941 A G
Osa04LNT0261600.1 4 20314140 A G
Osa04LNT0261600.1 4 20314411 C A
Osa04LNT0261600.1 4 20314877 G A
Osa04LNT0261600.1 4 20315245 T C
Osa04LNT0261600.1 4 20315305 C T
Osa04LNT0261600.1 4 20315399 A G
Osa04LNT0261600.1 4 20316447 A C
Osa04LNT0261600.1 4 20316653 A T
Osa04LNT0261600.1 4 20316855 T C
Osa04LNT0261600.1 4 20317177 T A
Osa04LNT0261600.1 4 20317572 T C
Osa04LNT0261600.1 4 20317711 C T
Osa04LNT0261600.1 4 20318548 A C
Osa04LNT0261600.1 4 20318784 A G
Osa04LNT0261600.1 4 20318947 T A
Osa04LNT0261600.1 4 20319207 T C
Osa04LNT0261600.1 4 20319632 T A
Osa04LNT0261600.1 4 20319803 T A
Osa04LNT0261600.1 4 20319824 G T
Osa04LNT0261600.1 4 20320649 T C
Osa04LNT0261600.1 4 20311900 C T
Osa04LNT0261600.1 4 20316498 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0261600.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0261600.1 4 qFRP-4 Physiological trait Source activity RG788 RZ565
Osa04LNT0261600.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus