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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0261700.2

GCAAAACTAGACGTTAACAGTGGATGTCTTTGGCAAAGTAATGAAGCTTTCTTCTTCCTTTTTTCTTTTTTGCTCGAACGAGGTGTGCTGCAACCTCAAGCACCATGAATTGGTGTGACACCAAGCGTTCATCTGCGTTTGGTGATTGTCAACTGATGGATTGATAATGATCCGTGCTCCAGATCATGTGGGTCAGTAGGTCACTCCGTTTCTTCACAGTGAAAGCACAATGCAGAAATCTTGTAAAAGAAGCCCTTTGCATTAAACCTCACCCAGTTTCGGACTGCTGCCTTGGGGTGAGCTGAACTGGCTATCTCGAGACAAGAAAGATGACTTTGTGATCTCCCGCAATTTACCACCTTCCAACAAGACAATTCTATCAGCCATTAGGATCATTTCCAGCCGATGAGCAATGACAAGAACAGTGTGGTTTGCCATTAGATTCGTCAATGCTTCTTTCACTAGTATCTCAGACCTGCTATCCAAAGCTGATGTTGCTTCATCCAATATCAGTACGGAGGAGTTCTGATAGATCGCCCTTGCAATAGATAATCTTTGTTTCTGCCCACCACTAAGGCTAGAACCTTTTTGCCCTACATATGAATTATATCCTCCTGGCAACATCTTAATGAACTCCTCAGCATTGGCAATCTTAGCAGCGCTTTCAACCTTGCTCATATCAATAGCTCCCATGGGGTCTCCATAAGCAATATTTTCAGCAATTGTTCCAGAGAGCAGCATCGCTTTGTGGTTGATAAAGTCGAAGGAGTAATTTGGCAAGAGTAGTTTTCCCTCCACCTGAAGGTCCAACAAAAGCAATAGTTTCTCCTGATCTGATATGAAGATTCACGCCATCTAGTATTGGCGGCATGCCATCAATATATTGAAACGTAACATCATGGAAGTTAATGTCCCCCTTGACATATTTTAAATGAACAGCGGTTGCTTTATCCCTCACCTCAGGGATGAACCTTGTTAGATCAAATATGCGATCCAATGCTGGTTCTCCTTGCTTATATTCATTGTATGCCTTCCCAAAATCCATCAAAGAAGGTGCCTGAAACTGCTATTGACCCAGCACAGAGCACTAACAGGCCTCCGATGTAAGTTGTTCGAACAACCTGAGGTATGAAAGCCTTCATCTTCTTCTTACTTAGATTATTCTTTAGATCAACAATAACTAAATTTTGAAATCTCGATATCTCCTTGCCCTCACCATTGTTTGCCTTCACAGTGAGCATCGATGGAAGTACATCATTGAGATAGACTGTAAGCATGGCAAGACTAATGTGAGCCTCTTTGGATATTTGGCGGAGTCTTCTGCCAAGACTTGCAATGACAAGCCACATACATGGAATTACCGTTGCGGCAACCACTGAGAGCAGGGGATTGATTGTCACCATTTGATGTCCCATAGCTATCAACTGCAAGCTTGTTGGCACAATAGTATTGAGGACAGAGTACACGGCGTCCGCGACGTCGTCCGCCTCGTCGGTGATCCGGTGCGCGATGTCTCCCGCGGACAGTCCTCCACTGCCCTCGAAGAACGCGAGGTCACGCGCAAGCACCCCCTCGAACGCGCGCTCCCGCAGCCGCCCCGCCGCCCGGAGCGCCGCCTCCCAGAGCAACGCCTGCTGCACGTACGCCGCGGCCGAGCGCGCAGCGGCGAGTCCCGCGAGCGCGAACCCGCCCTTGAACGCCTCCGCGGCCCCGCCCCCGCAGGCCGCGAGCGCTCGCGGCAGCCGCCCCGCGGCGGGCACCGCGCGCGAGAGGCAGTACACGGCCGCGGCCGCGCACGCCCACCCCTTCACTATGGTCTTCCACTCCACGGCGACGAAGGGGAACGCCTCGTCGAACAGCGATGGCAGCGGGGAGTCGCGCGCCGCCGTGGCGCGGAGGCGGAAGGAGCACGCCGACGCCGGCGTTGCGGGCAGAGCTAGGGTCCGGGCGCGGACACTGCCTCCGCATCTCCGCCGCGAGACGTGTGGGGCTAACGTTAGGGTTTGCGAGGAGATGGGAGTGTGAGGCATCGGTGTCGGTGTCGCCATGGCCGTGGCGAGAGCTCGCAGCGCGGCGCCGTGCGGGAGCAGAGAGGCGTGGC

Coding Potentia
Explanation CPC Score
noncoding -1.24237
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0261700.2 4 20405868 T A
Osa04LNT0261700.2 4 20405951 A C
Osa04LNT0261700.2 4 20406057 G A
Osa04LNT0261700.2 4 20406221 A G
Osa04LNT0261700.2 4 20406514 T C
Osa04LNT0261700.2 4 20406630 T C
Osa04LNT0261700.2 4 20406731 G A
Osa04LNT0261700.2 4 20406854 G A
Osa04LNT0261700.2 4 20407111 G T
Osa04LNT0261700.2 4 20407177 T C
Osa04LNT0261700.2 4 20407816 A C
Osa04LNT0261700.2 4 20408371 A G
Osa04LNT0261700.2 4 20408639 C T
Osa04LNT0261700.2 4 20409184 T C
Osa04LNT0261700.2 4 20409435 A G
Osa04LNT0261700.2 4 20409478 G C
Osa04LNT0261700.2 4 20409954 T C
Osa04LNT0261700.2 4 20407674 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0261700.2 osa-miR397b Translation 5.0 16.36 1 21
Osa04LNT0261700.2 osa-miR1847.1 Translation 4.5 18.314 1 21
Osa04LNT0261700.2 osa-miR2876-5p Translation 4.5 14.927 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0261700.2 4 qFRP-4 Physiological trait Source activity RG788 RZ565
Osa04LNT0261700.2 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0261700.2 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus