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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0262000.1

ACACACTGACCTGCAAGCTCGCTGGGCAGCTTACACAGGGGAGTGAAGTAGAGTGAGTGTGAGAGAGAGTGAGTGAGAATGGGTGGCAAGGCCGCTCTCCTGATGGCCCTGGTGGCCATCAGCGTCGTCCTGGAGGCCAGGGCGGACGCCGGTGGCTACGGCGGCGGGTACACGCCGACGCCGACGCCGGTGAAACCGGCGCCGAAGCCGGAGAAGCCGCCCAAGGAGCACAAGCCGCCGCACCACCACGAGCCCAAGCCGGAGAAGCCACCCAAGGAGCACAAGCCACCGGCCTACACGCCGCCCAAGCCGACGCCCACCCCACCCACGTACACCCCGACACCCAAGCCTACGCCACCGCCATACACGCCCAAGCCGACGCCGCCGGCTCACACCCCTACTCCCCCGACGTACACGCCGACCCCCACTCCACCCAAGCCGACGCCTCCCACCTACAAGCCACAGCCCAAGCCGACGCCTGCGCCTTACACTCCCACTCCCACACCGCCAACATACAAGCCGCAGCCCAAGCCGACCCCGCCACCGACGTACAAGCCGCAGCCGAAGCCGACTCCCACCCCCTACACTCCCACTCCGACGCCGCCATCGTACAAGCCGCAGCCGAAGCCGACTCCCACCCCCTACACTCCCACTCCGACGCCGCCATCGTACAAGCCGCAGCCGAAGCCGACTCCCACCCCGTACACTCCCACTCCGACGCCGCCATCCTACAAGCCGCAGCCCAAGCCGAACCCGCCACCCACGTACAAGCCGCAGCCCAAGCCAAACCCGCCACCCACGTACAAGCCGGCGCCGCCAACCTACAAGCCGCAGCCTAAGCCGAACCCGCCACCCACGTACAAGCCGCAGCCTAAGCCGACTCCCACTCCCTACACTCCACCCACGTACAAGCCACAACCGAAGCCGACTCCCACTCCCACTCCCTACACTCCCACGCCCAAGCCGAACCCGCCGCCAACCTACAAGCCACAGCCCAAGCCGACTCCCACGCCGACGCCGTACAAGCCGCAGCCCAAGCCGACTCCTTCTCCCTACACCCCCAAGCCAACTCCGACGCCGCCGACCTACACACCGACGCCAACGCCGCCGTACCACAAGCCGCCGCCGTCCTACACCCCCGGCCCGCCGCCGCCCTACTAGTTGTGTTCCGCCACTCTCCGTCACGTTCCGACCAAAGGAGGTGACCGACCGACCAGAGTTGTGCGAGAGGCCAAAGAGGCTCTTCCTTCCGTGAAGATTGCTGTGCATGCCGAGCTGCGCTGCCTTTAATTACCTATAGCTAATTAATTAGCTAGGGCCAATGTTGCGAGGAGAATAATGCATGCTTGAGTGCCAATGTTGCTAGCTCGCTCCCTCTCTAGATGTGATGTGTATCATGTGTTGTGTGTTGCTCGAATTTGTACTGTCTAGCGTACGTCGATCCCGTGGTGATTTGTGGAGTATGGTATTGTTGTGTTACGGTATAACCAAAAATAACAGCGGAAATGGAAGTAAAAGCTGTTTTCGATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.290324
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0262000.1 4 20708141 T C
Osa04LNT0262000.1 4 20708544 G A
Osa04LNT0262000.1 4 20708945 T A
Osa04LNT0262000.1 4 20709000 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0262000.1 osa-miR156b-3p Translation 4.0 23.46 1 21
Osa04LNT0262000.1 osa-miR2920 Cleavage 5.0 14.663 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0262000.1 4 orl1 Morphological trait Culm/leaf S10628 C377
Osa04LNT0262000.1 4 qFRP-4 Physiological trait Source activity RG788 RZ565
Osa04LNT0262000.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0262000.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus