\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0262500.1

CGACGACCAGGAGCTGAGGAGCAGCAAAAAAGAAAAAAAAATCGATTAGTTCACGCAAAACCCAAAAACGAAAAAAAAAAAATCTTCATTGAGTGTTAACTACGGAAAATATCTGACGAATTCGTCGCGAAATTTCGTCCTCTTTTTTTCGTCAGAAACGAACTAAGCAGCGGGGATCTCGGGATAGCGAATCCCCAGATTCGGACTCGATCTCGCTCCCCTCCGATGGTCCGTCTCCCGGCTGCCGGCGGCGACGGCGACGGCGGCGGCGACGGCGGCGGCGTCCTCAACCTGACCTAGAAGGAAGAAGGTGTGAATCTCTGCTTTCTCGCGCGATCCGGCGGCGGCGGGATGCAGTACCACCAGGGCGGCAGCCGCATGCCGCCGTTCG

Coding Potentia
Explanation CPC Score
noncoding -1.11631
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0262500.1 4 21373184 T A
Osa04LNT0262500.1 4 21373438 C T
Osa04LNT0262500.1 4 21373445 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0262500.1 osa-miR1850.2 Cleavage 4.0 7.356 1 21
Osa04LNT0262500.1 osa-miR1854-3p Cleavage 3.0 23.749 1 22
Osa04LNT0262500.1 osa-miR2928 Translation 4.5 16.912 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0262500.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0262500.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0262500.1 4 orl1 Morphological trait Culm/leaf S10628 C377
Osa04LNT0262500.1 4 qFRP-4 Physiological trait Source activity RG788 RZ565
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus