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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0262600.1

ACTAGTACATGGTGTTGCCTTGTAAATAGATCATGGTGCAACTGATGAAACAATACATTTGTGGTTCAGTACATTTCTCACCAAACACTGGCCTTGTGATATGTAGTACAGATGAGAACCACATGTAATATAATGTAATGTAATGACTGCTCTTTCTACATTGCCAGGACTGCAGATTAGGAGAATTTGGTCCTCGGATACATTCTGAAATATACTTGTACTGAAGATGAACATTCCCAGCGGTATCATCCGCGTTGTATATGGCTTGAAAGGGGCATTATGACATTATGAGAAGATACACTTCCATGAGCTGTATATATAGCTGATTATTTAGGGTGGCTAATTTGTAGCAGAGTTGCATGAATATTTCTTCTACATGCTGCTGGGTTTGGGTTCTTTCTCCGTGATCACGAGCTCGTTCCACTCCGGGTTGCGAGGGAGGTAAGTCTCGGAGATGTAGGAGCAGGTGGGGAGGACGCGCATGCCGCGCTCCCGCGCGTGGGCGAAGGCGGCGTCGCAGAGCCGCGCCGCGAGCCCACGCCCGCGCTTGCTCCCCGGCACGTACGTGTGCGCCATCTCCATCACCGCTGCCGGCGTCGTCGCGCCGCCGCCGCCGCCGCCGTCGCCGGAGGAGGAGGAGCGCGGCTGGGCGGCGGCGAGGAGGCGGTACTGGAGGTAGGCCTCGCCGTCGGGCGTCTCGAACCTCCTCGCGTCCTCCCTCCACAACACGACCTCCTCCTCCGCCGCCGCCTCCCGACCGCCGGCCTTCGCCAGCGTCGCAGACCCTGGTGTGTTCGGCCCCAAATTAGATTGC

Coding Potentia
Explanation CPC Score
noncoding -1.09107
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0262600.1 4 21386227 T C
Osa04LNT0262600.1 4 21385678 C G
Osa04LNT0262600.1 4 21386086 T A
Osa04LNT0262600.1 4 21386183 T A
Osa04LNT0262600.1 4 21386191 A C
Osa04LNT0262600.1 4 21386244 T C
Osa04LNT0262600.1 4 21386254 T A
Osa04LNT0262600.1 4 21386322 A G
Osa04LNT0262600.1 4 21386360 T C
Osa04LNT0262600.1 4 21386631 T A
Osa04LNT0262600.1 4 21386647 G C
Osa04LNT0262600.1 4 21387136 A G
Osa04LNT0262600.1 4 21387141 T A
Osa04LNT0262600.1 4 21386226 T A
Osa04LNT0262600.1 4 21386584 G A
Osa04LNT0262600.1 4 21386281 C T
Osa04LNT0262600.1 4 21385860 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0262600.1 osa-miR1428b Cleavage 5.0 14.668 1 21
Osa04LNT0262600.1 osa-miR1428c Cleavage 5.0 14.668 1 21
Osa04LNT0262600.1 osa-miR1428d Cleavage 5.0 14.668 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0262600.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0262600.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0262600.1 4 orl1 Morphological trait Culm/leaf S10628 C377
Osa04LNT0262600.1 4 qFRP-4 Physiological trait Source activity RG788 RZ565
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus