>Osa04LNT0262700.1

CACCGCTGCCGCTCCCTGCTATCCCTTTCTCACCCCGCCTGCCTCCGGTCCCCCTGCTTACCCCGCCTACCTCCCCCATGATGCGGCGGCGGCGGTGGCGACGACGACGACGGTCGATGGGGTCATTTCCTCCCCACAGAGGTGCTTATTGTCGCGGTCAGGTCCGTGCGATACGTTTGTTGCTGTTGTGCTGCTGTTCCCTTTACCATCAGCTCCTGTTCAGGTTGCGGACCGCATCTTCTGTGCCTGTACATGTCAGCTAAGGTATAACAATTGGCCTCTGATTTCACCGCCGTTTGGGATCGCGTCCCTGACGCGGGAGTAGCCCTCCGTCTTGAGCAGGTGCTGCCCGCTCTCGGTGCCGGCAACGACGGCGGAGGCTGACCGCAGAGGTGGCCTACGGCTGCCGCCGGTGGTGGACATGGCCTGGCCGGAGTCGATCGTTCTCTGTTCGTTCACTGAATGTACCTGGGAAAATTGGCAGATTGTTTTCACGCCTGAAGTGAACGTTGCTTTAATTTATTTCTTAAAGTAAAATGCAAATAGCGATGAATTACGATAGGTATCAATGCAATCATGCATATACTCCCTCCTTTTGTTTCATATTATAAGTCGCTTTTATTTTTATCCTAATCAAAC

Explanation	CPC Score
noncoding	-1.24201

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0262700.1	4	21498165	T	C
Osa04LNT0262700.1	4	21498184	C	G
Osa04LNT0262700.1	4	21498214	T	A
Osa04LNT0262700.1	4	21496120	G	A
Osa04LNT0262700.1	4	21496463	T	G
Osa04LNT0262700.1	4	21496868	A	G
Osa04LNT0262700.1	4	21498131	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0262700.1	osa-miR2093-5p	Translation	4.0	17.965	1	20
Osa04LNT0262700.1	osa-miR5488	Cleavage	3.5	7.648	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0262700.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0262700.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0262700.1	4	orl1	Morphological trait	Culm/leaf	S10628	C377
Osa04LNT0262700.1	4	qFRP-4	Physiological trait	Source activity	RG788	RZ565

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus