>Osa04LNT0263500.1

CCAGTAGATTGAGAACATTTATCTTTAAAAAAAAACAGAGAGAGAACATTGTTTTCACTAATAATTTCAAGTTTCCTAGTACAGAGATGCCAAATCACACTGAAAAAACATATATTGATCATGTGATATACACCGTTACAAAAAAACAATCTCACTAATGTAAATGTGGTCTTAGTCAGGATTCAGGAAGAATACATCACATTTCACAAGTAGTTATTTTGTCAGTTCAGACTTCAGAGCCGAGGCAATGAAAGAAGGTTGTATAGTCCAAGGTTCGTATATCCTTCGAGCTATTGGGTCCAAGGAAGCTGCCCAGGGTAAGGCACCAGACCACAGTATGAGAACAGACCCTTCAGCTCAGGGCAACCATTCGGATATGGAATGGCACGGTGAAATGGATCCCTCTTAAGCCTCTTCATATGAAGAGAACCTAAGCATCCATAAGGATCTTCCTGGAACTGAGATCTAACAGCGGCTTCACCCTTGACAGCAGACTCCCTTGCAGTCAGTGTAGCAGGGGTACCTAAGAAGAAGAATCTCCCTTCAGGGAATCCAAGAGCAGATCTGTGCAATTGCGCAAACCTTTCCTCCTTAAAATCATAGCTTACAACAGTTATATTTTGCGGGTAACTTCCAGTGAGTTCTCTAAACCGGCAAACGCTAAATAGGAGGTTTTCAAAACTATCACGTGCATGCTCCTCGGTGAGTGCCCGTCTCCTTACACTTTCATCATTTCCTGTGCATATACAAGCAAACTATAAGTAGTTACAGAGGATAGTCATTAAGTCGTTTAGTCATCAGTGATAGCAAATTCAATTTGATGCTAATATTACTACACTCCAATAAGTAAATACCATCAACTTCAGAGATCATTTACTTATATGAGCATATATATTTTCATTATCCATCTTCCTGAGATTCTATACTCATACACTGAAACTTTATTTTTATCATAACCAGAGAATTCTAAGTTTCAAGGAATTGCTCAGTGACCTGCAGAAAATATGAATAAACTATTTCCTTTTTTATTTCCCACTTCCAAAGCATTAGCACGGCATTTCTTTGTTAAGGCTTTTATATATATGTTCCCACGCATATGTGTCTAAACATAAATGTAAGTCCTTTACTCATTGAAAAGAATTATGATTGTTTTGCTCTTTTTCAGAGCAACTGAGAATTTAGTGGTTAGAACTAATATCTAATTGTACATCTAACAATGCTATGATTAGACCAATAAGCAAAAGAACAATTGGCAATGCAGTTTCAAATTCCAGTGTGTCAATAAAACTAGTATTGCGGCGACCCGATGAAAACCATTAAAGCAGCCAAACTCACCAAACCAGCCTTTCGAATCCGCGATAGTCCAGTAGCTCTGAGCCTCGCTCCTCGGCCCCGCATCTTTCCTCGTCTCGCCGCCGCTGAACAGCAGAAGCGCCTTCTCATCCCTCGCGGCGATACCCACGCCTTCCTTGATATGCGCCAAGAACGTGGCCGCCTGACCGGGGTGCTTCTGATACGGCTCCAAGAACCAAGAGTCCTCGCGATCAATCTTCCCGCAGCTCTCGCTCGTGTAAATCGAATGCCCGGCCACCATCACAAGGTTGCGGAGCTCCGGGAGCGGATACTCCCCGACCTCACCCGAAGAACCCCGCATCATCCTGAACCGGGTCTCGTACACCGACAGGAGGATCAGCACGCTGAGCCCGAAGGACAGCAGGATGAAGGCGACCGCGACGGGGTGCGCCTCGTAGAAGTACCGGATCTTCATCAGCGTGGAGGTGAGCAAACCGGGGGCGTCGTGGTTCTTGGGCTTGCGTAAGCCCTTGCGGGCGATCCCGGACTCGAGATCGAAGTCCGCCCTAGGGTAGCGGAACGACTTGGGGCTCCCGCCCGGACCGAATCCCTGGCTGTTCATCGCGCCCCACCGGCTCGATCCGAGTCTTCCTCCCGATCCAGGTCTCGCCGGCGCATGAAGCGGCGCCGGAGCGAGGGAGGGAGGGAGGGAGAGAGAGGGCTACGAGGCAGGAATGGGGTATACCTCCGGTTCGATTCGAGCAGAGAGGCTCGCCGGCGGGGCGAGGAGGCCGCACAGGGAAGGAGGCCGGGCTCCGGCAAGGAGAGGAGCCGTCCACACCGCCGTGCGTGCGTGCGCGCCTCCGCGCCCCCGCGTCGGCCGCCGGCGGATGGAGAGGGGATCAGGATCGCCTGCCTTAACGGGGGAAGAGAGCAGAGGCGAGGAGAGGAAAC

Explanation	CPC Score
noncoding	-1.14676

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0263500.1	4	21799928	T	C
Osa04LNT0263500.1	4	21799970	G	A
Osa04LNT0263500.1	4	21801029	T	G
Osa04LNT0263500.1	4	21801546	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0263500.1	osa-miR6247	Cleavage	4.0	16.368	1	21
Osa04LNT0263500.1	osa-miR2098-5p	Cleavage	3.5	24.885	1	20
Osa04LNT0263500.1	osa-miR2099-5p	Translation	4.5	18.414	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0263500.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0263500.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0263500.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0263500.1	4	orl1	Morphological trait	Culm/leaf	S10628	C377

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus