\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0024200.1

GGAAATGTCTGTTTTATTATATTCAGCAAACAATGACATTTTTCATACGATGAAATTTATTAACCGAAGCAACAAAAGTGATGTTTGATCACAAATTTGTTTTTTTACCTCCTCTTCAATTGTACTTAGCTGCATGTGAGGTAATCCATTTTTCATGTATGAGTAGGAACATGAGTGTCTTGAAGCTTCGGTTTGCTGTGGTCTCTGCCTGTGGATTTGCCCGTGACAGACTGACAGCTATAGAAACTGTTGGCATCGTAGAAGAATTCATTTGAACAATTGCATGCCTGATGAATCTCCCTTTTGTCAATTGATTTATTTTATTCTACCATTATGAAGAACATCCTCTGTAGTCCAATCAGAAAGAACAGAAACACTGGAAATATCTGGAAGTGCTGTTGTGGAAGAAATTTCTTGTATTTCTTGCGAAGCTAGTACCCTCTGCTGCAGCCTGTAGGTGGTAGCAGTACGACCCAGTAGAAGGCTATCTATCTCTGATCTTATAGTTCTATCATAATTGGAGGCTCCTAGTATACAAAATATTGATGAATAGAAAGAAAGCAACAACAGAGGGAAACAGGTCGTTTTTTGGCGTGCTTAGGGTCTAGGCAGTAGTATGCGCGTGCCAACCGATGAGGTCCTCTAATGGTGCCCATTCCATTTTAATGGAGTCGAGGGGGAGGCCGACGGCACTGGAGACGAATGAAGCGGATGTTTTCCCACAAGCAGGTTTATGGAGCGATGGGAGAGGAAGGTAGGCGAGCAGATCAGGAGGGCCACAGGCAAGAGAGGAAGCGTCGTGAGAAGACCGAGGGGCAGCGGTGGGGCGAGTTGGGGCACCTGCACGGGAAGGCCTGCCACCTGGGGAAGGGAGAGGGGCAGGGGGAGGGGGAGGAGAAGCGCCGGAGTGGGGGAGTGGAGGAGAAGCGCCGGGGGGAGGGGGTTGGAGGAGAAGCGGCGCGGCTGGGATGCGTGATGCGAGCGCGTCGCGCGGGCTGGTGGGGAAGGGAGGAGTCGCGCGCACGGTGAGAGGAACGCGCCCGGCGGCGGCGGCGGAGAATCTGGTGC

Coding Potentia
Explanation CPC Score
noncoding -1.04604
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa01LNT0024200.1 DTM_#DNAt_MULE_japo_Os2400 Chr1 - 21535396 21536446 1050
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0024200.1 osa-miR417 Translation 4.5 19.114 1 21
Osa01LNT0024200.1 osa-miR529a Cleavage 5.0 19.357 1 20
Osa01LNT0024200.1 osa-miR1872 Cleavage 4.5 20.129 1 24
Osa01LNT0024200.1 osa-miR5075 Cleavage 2.0 23.192 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0024200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0024200.1 1 qNVB-1-1 Morphological trait Culm/leaf R2159 C178
Osa01LNT0024200.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0024200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0024200.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0024200.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0024200.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0024200.1 1 nan Resistance or Tolerance Drought tolerance RM129 RM5
Osa01LNT0024200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus