© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0024500.1
GCCCAAAATGAAGTCTATTTGCGACTTTGAGGGACTACAAGTATGTACAGTAAACATAAGATCAATCATAGCATCCAATCTACTTCTAATAAATGGTCAAGACAAAAAAAGCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAAGTGCCAGTTTCCCAGCTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTGTTTGTGAATTATTATGCGGAATGACCCTAATAACATTGGTCTGGTTGTCCCGGCTGCCAGATGAGGGCTGAGGCTGTGTGTTCTGAGCTGATGCTGTAGGGAAGGCGGACACAGGACCACTTCCACCGCATTGGAGCCTGTCAAAAGGACTGCTAGCGCTGCTGGCTTGCGCCTCACTATCTCTTGAGGCATGAAATCTCCAAATGCCACTTGGATGTGACATGTTGCATGACATCCGAGAGTGTTGCTCCAAGTTCCCATAAGGCTGTGGCATAGAAGGATGCCTGCCTTGTTCTACTGCAGATGCTAGTGCAACTGGGTTCATCACTGGTACACTGAAAGGCGGGAAGTAGTTCATAGGCATGGTAGGAGTGCCAGGAGCACCCATATGTTGTGGTTGATGAGGTATAGGAACACCATATGCTGAATTCATGAAATCTCCAGTTGTCGATGGGAGCCTCAGGGGAGTACAATTGGCATAAAATGGGGCCAATATGCTTCCGGCTGGAGGACATGGGCCAGAATAAGGCTTATAGACAAGCCCTTCTGAAGGAGACATGACAGGGATAAGCCACTGATTCTGCGGTGGTTGTAGTTGAACCCCACAGTTATTCTGTCTGTTATCAGAAGCAACGGGCGTAGCTCGAAGATTGCTTTTTGATGCACCGATTTTTGCAGTTTGATCATGATGACCACTGACAGGTGCAGTATCACGAGGAGAGGGTGGGTTCTCTTCAGAATTTTCTTTCGATAATTCTGGTTCCTGTAGACTTGGCTGCACATCATCATTGGTTGCAACTAACACAGGCTGAGCTTTCAAGTTCTCTTCCGCCATTTTTTTCTTGCTAGCTAACAAGGCATTGCCAAGGCAAGGATCACCTTCAATAAGTACATGTGGCGATGCTGCAATCAACTTCTGCACTTTTACCAACTTATGCAGCTCAAAAACTTGGGCAGCAAAAACCCTCTGTTGATTTATGATAGCCCGCCTTGCTTTCCAAAAATGCTTTGCACCAATGGCACCAACAATTTCATCTGGAGAAATCTCCCAAGCAGTTATACACTCCACTGAGGAATCAGACAAATCATCAATTTTCTCTGCATTATCCTGTGCTTCCAACCTTTTTCTCTTTGTACCAGCTTCCTTTAAGCCTCCTTGAGGTAAATTACAATGCCCATTGGTATTTTCAATACCAGGAGATGGTTTAGCGGATATTGTATTTCTTCTCACTGGAGGGTTCTGAAATTTCACGGAACTCCCGTTTCTACTTGTCGCTTGATGCTCGCTGTTTTCCAAATGTGGCTCATCCAAATCATTTATAGTGCCTGTCTTAGGACATACTTTAGCATGTTTGCTTCCAAACATATCTTTGGATGCCTCAAATGATGAAAAATGTTCAACTTCCACATTTTTCAATGTTTGTGCTGGTCCTGTCTCCTTGTCTTTCTGAGAACCCCTTGATTTCACATCAGAAACATTGATTCTCTCCAAGTTCTTACTAACAGTGTTATAACACTTTGTCGGTGATTTGGACACTGCTGGAGGGCTTTTGTGCGGACTGAGAGCAACAAGGGGTGTTGATTCCTCTTGAACCCCCGCACGCTCTTTAGTAGAATATTGAGGAAATCTGGCACTGAAAACAGAAGGTACAATGAATTCATCATCATCAGCCAATTTCCTTCCCGAAGAACTCTTTATGCCCTTTTCCACCCTTTGCTGTGGGGCACACTCAGCCCTTGATCCTGAACCATATTTATCAATGCCCTTAGGCTGAGTGGATAACATCCCCGAATCTTTTCTTGAACCATTAATCTGTCTGTTGACAGAATTTGAATTCATCTTTTCAACAGACTGGCCAGGTCCATTGGAAGGCACATTGAACGGCTCAAAAAGAGGCATGTCACATCCATATACCTGGCTCTGGCTCGCCGCCGACGTCGAGCGCGCCAGGCTGCCCCGAGCCGAGGCGAGCGCGCCGCCTCCGCCGCTGAAGCGGTGGGACGGCACGGTGAACTGCTCGTAGAGCGCCATCTTGTTCCTGGGCGGCGCCCGCGGGCCGCCGCCCTTGGCGGCGTCGTTGACGTGGAGCCGCGGGAACAGCGGGCCCATCACCTTCCCCCTCTCCTCCACCTCCTTCCCTCCTCCTCCTCCTCCCCTCATCGCCGCCTCCCCCCGCAGAAACCACCAACCCACCAGCAGCAGGTCGAGGAAAGGAAGGAGAACCCCCTCTCCCGATCGATTCGTAGGCCGCAGGTTGTGGGGGAGGTCAGGTCAGGCCATGGCGGGGCGGAGGAGGAGCGCGAGGCGGGGGGCGGTGTCTGTGGTGGCCATGGAATGGAAGGCGAAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0024500.1 | 1 | 21637589 | A | C |
| Osa01LNT0024500.1 | 1 | 21637707 | C | T |
| Osa01LNT0024500.1 | 1 | 21637713 | G | C |
| Osa01LNT0024500.1 | 1 | 21637907 | C | T |
| Osa01LNT0024500.1 | 1 | 21639831 | A | G |
| Osa01LNT0024500.1 | 1 | 21640212 | A | C |
| Osa01LNT0024500.1 | 1 | 21640225 | C | T |
| Osa01LNT0024500.1 | 1 | 21640949 | T | C |
| Osa01LNT0024500.1 | 1 | 21641054 | T | C |
| Osa01LNT0024500.1 | 1 | 21642302 | A | C |
| Osa01LNT0024500.1 | 1 | 21642339 | C | A |
| Osa01LNT0024500.1 | 1 | 21642408 | C | A |
| Osa01LNT0024500.1 | 1 | 21642693 | G | T |
| Osa01LNT0024500.1 | 1 | 21638802 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0024500.1 | osa-miR6246 | Cleavage | 3.5 | 22.957 | 1 | 23 |
| Osa01LNT0024500.1 | osa-miR169r-5p | Cleavage | 4.0 | 18.518 | 1 | 21 |
| Osa01LNT0024500.1 | osa-miR1439 | Translation | 4.5 | 13.384 | 1 | 21 |
| Osa01LNT0024500.1 | osa-miR1861d | Cleavage | 5.0 | 14.59 | 1 | 22 |
| Osa01LNT0024500.1 | osa-miR1861h | Cleavage | 5.0 | 14.59 | 1 | 22 |
| Osa01LNT0024500.1 | osa-miR1861j | Cleavage | 5.0 | 14.59 | 1 | 22 |
| Osa01LNT0024500.1 | osa-miR1874-3p | Cleavage | 4.5 | 16.003 | 1 | 24 |
| Osa01LNT0024500.1 | osa-miR2864.1 | Cleavage | 3.0 | 16.81 | 1 | 21 |
| Osa01LNT0024500.1 | osa-miR2919 | Cleavage | 3.5 | 12.17 | 1 | 19 |
| Osa01LNT0024500.1 | osa-miR5500 | Cleavage | 5.0 | 18.727 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0024500.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0024500.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0024500.1 | 1 | nan | Resistance or Tolerance | Drought tolerance | RM129 | RM5 |
| Osa01LNT0024500.1 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0024500.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0024500.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0024500.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0024500.1 | 1 | qNVB-1-1 | Morphological trait | Culm/leaf | R2159 | C178 |
| Osa01LNT0024500.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)