>Osa04LNT0265200.1

ATTATCAATAGAAAAATACTCAATTACATTGATTCTTCAGTTTACATATACTTTTGTAGTACAAAGTGGAGCTGAAAAGTTGACAAAAAATTCCTCTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAGATCGAAACGATAAAAACATAAAAGACAACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAACAACAGTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTGGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTTTGGATTTGTACTTCCATTGCTGGTCAGCATCATGATGGAGGCTGGAGCATCAGCAACCTTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCGTGCCGGCCGGCCGCCGCACGCCGGCCGGCCGTT

Explanation	CPC Score
noncoding (weak)	-0.960967

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0265200.1	4	23125342	C	T
Osa04LNT0265200.1	4	23125532	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0265200.1	4	orl1	Morphological trait	Culm/leaf	S10628	C377
Osa04LNT0265200.1	4	qChla4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0265200.1	4	qChlab4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0265200.1	4	qPH1-4-1	Morphological trait	Dwarf	RM241	C2807
Osa04LNT0265200.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0265200.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0265200.1	4	d11	Morphological trait	Dwarf	nan	nan
Osa04LNT0265200.1	4	nan	Morphological trait	Culm/leaf	RM3337	RM3785
Osa04LNT0265200.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus