© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0265900.1
AAACTAAAATAAATCATCTGGCATTACCAAATGCTAACAGCATCACAGTAACATTGTAGGTAGTAGCACCAACCGAAAGGCTGTCACCTAGCTGTTACAACTCAGTCAATTTGCGTGTCTGTACCACAAGCAAATGCCACTGTACACAGTAATTTCCAAGTTGCTCCAAATCTTTCTCCCCTATTCAATCCCTGATCTCTGTGCCAAAAATCCGATACCTTCTGCTTCCCCAGGGATCGTTCTTGTCCAGACGGTAAGACTTCAAGCAACACCATATCCAAGGTGGGTTCCTATTCGATGGAGCACCTTCCTCGGTGTCTTCTGGGATACCCAGAAGCTTGTTCATCTTTCTGATCACAGCTTCTGCCGTCAGGAAACCACCAAAAAATTTGGCCCCATCGTCCTTGTGGATGTACGCATGAATTCTTGCCGTAGGATCCTCAAGAGTCAACCTTAGACAACAATTGCCAGCCAATAGTGAACAAAGATGACTAGCTCCACGTGGATATGCTGCAACAACTCGAACCAAGGTTTTGAATTTGTGCGTCACCTCTCCATGGGTGAGCGACTCCATCAATGTTGTGTAACCTGCTCTCTCGTATTCTACATCAGCAATATCAGAAGCATTGGGGAGGCTTGCCATTGGCTGACGATGAATTTGGGTGGCAATGCGACTGTCGAATAGCTTCAGACGATCAGCAACGCTGCCATCTTCATTTGATAAAAGGCGGACTCTGCTAGAAGGCAGCAGAATCCCTTTCCACATGCCAAACTGCTGCTTGCACGTCATATTACAGAACCTGGCCCAATAAATACCCTTTTGCAAGTGTAGCATTTCCTTGAAAAACCTGTTTGAGAAAACCCTCAGCACACTCCCAACACAAGGCAATGTGCACAAAACCTCCCTTGGCAGAGGTGCTCCTTCAAGATGTAGAGGGGGTGGAGAAACTGATTCATTGTCCAAGGTCGGGAACTCGGTCACAGGTGTATCAGTTCCATCCCAAACATACAAAATCCATACGCCATTGGAAGCTTCATGAACATCTAGAACCTTGCATACTAGATCAAAAGTAGAATCGGATTTTATACTCCTTAACTGCAGTTCAAGATCTTTCAGACCTGGAGGATTATATACAATCCACATTCTCAAGTGAGTCAAAAATTCACTGTCATGTTTGCTGCCATGGTATTTCATAGAATGCTGATATGGTATGCATCCCGTAGATACTTTCCCTTCAAATAGCGCAAATGAAGAAAACCTTTTGTTATATGTGACAAAGAATTCGCCATGGTGCATTGTTATCACAACATTATGGAGACTGATCACATCTCCACTTGACCTAACACAGGGCAGTAATGCAGTGTTATCAGCAAAGAAGGTCACAGAGATTGCAGATGCACGTGAGTGATCCACAATCCTCAACGTAAGAGTGAAATCGGTGCCGCGGCTGCGGACGGCCGCGCCGATCTCGGAGACGGCGGCGAAGAGGCAGACCCGGGCCCCGGGGGCCTTCAGCGCGTCGGCGATGGGCAGGTACACGTACTGCGCCTCCCCGGATGCCGCCGTCGATGGACCCACGTCGCCGTCGCGCGGCCGCTTCCGCTCCGGCGCCGCTGCCTCCTCCATGGCCCGAATTTGTGCGCGCAGCGACGTGGGCACCTTGGTGAGCGAGGACAAGTTAATGGGAGGGAGGTGCAAGGCTGCAACTGCAAAAGCTCATACGGGGGTAAACAGTTCTTTTTTCCTCGAAAAAAAAAACAAACTCTCTCTCTTTTCGCTGAAAATATAAAATCGATAGCAAAATTTGTAAAACCAAACTAGCTTTTCAAGCCTTGTAGTCTGCTGCACTGCAGTAGCAAAGACCAGGAGCAAATCATTTGTTAGAACTCCGAACATCTGCACGAACGGTGATACTGATACAAAGTGCTAGTGGTTTCAGGCTTTCAGCTTCCAATAAGGCAATCGCCACTGAAAATGAGATATAATAATGGCAATTGCTACATTTACATTGTACAAAAGGGCGTGAGGTTCGTACGAAACAGACACACGAACTTCAAAAATGAAAGGAAAAAAAAAAGAACAAACCAATGAATGATTGTGTTCCTCTCAGGTTCGTCTACCCAGCCGTAGAAGACCTACAGATATAGCCGGATCACAGGGTACAATGAAATTCGCCTGACGAAAAAACTAGATTTTTCACACGAGAGCCATCTTCCCGCGGGGCAGAGAGACGCTGCGCCGGGTCTCCGGTAAGGGGACGTTGGTTCTATCACCGTGGGGCGCCTTGCTCCGGCGAGGCTTCCCTTCAGTCAGAGGTTCCATCTCCCGGACAGAGGCTCTAAGATCAATGCTCTGCGACTGTCTTGTGGACTGTGGTGGGAGCTTCCATGCCTTTCGGTTGGAATGGAAGGTGGGCTCACTGTTTGCAAACTCGTTTTCTATGTCAGATATGTTCCTGGGGATCTTGGCTTCTGACCTCACTCTAGTACCTGTGTTCTTGTTTGCAGTTTGCTCTTCTTTCTGAGGCGGCTTTGTTGCACTGTCGAGCCTGGTTTTTGTCATGCTTTCTCGGACCGATGGCTTTGCGCTTCTATTTTCTTCGGAGTCTCGGAATTTCCGTAAGCTTTGAGCCGTCAGGACGGATGAAGGGGTCTTCCTAGAGCTACTGTGCTGTACTTTTGGGGGCACTTCAATCCTTGATACTGGTGTGCAGTCGATGTTTTCAGACCTCTCCACGCTTTTGGCAATGCCAACTCTCTCGGCAGACAATGAACTTCTTACTGGAGGAGATGGAGTCTTGAACTTGGCACTCAAGTATAACTCCCGGTTGATGACAGGTGACTTCTCGTCCAGTTCTCTCACTGACAATGGAGAGCGGAACCTTCTCTGCTTTCCAGATGATGAGCTTCTGATCTCGCTTGTACAAGTGTCTACACTGGAATCCTGACCAGCTTCAGGTTTCGAGGACAAGGTGGTGGTTAGAGGTGACCTCGTTCTTGCATTTCTCTTTTCAGAGGCCACACGGTTCGCGATATCTCTTAGCTTTGATGCTTCACGTTCCTTGTCGTCTAATGCCAATTTCAATTTAGAAATCTCTTCCTTCAGATCTTTGACCTGCCCAACTTCCTTATTAGCATGAGCTGCACCAAGTTCTACGGTGGCTACACGCTCTGCAAACTTGAGGGTACTCATTGTTTCACCAAAAGCATCTGCTTCAGGATTCATGTGGACAAACATCAATGTCTTCGCCTGACCACCTAAGGCATCTTGTAGCACTTGTGTTAGCTTGCTATTTCGGTATGGGACGTGGGAGCTCTTTTGGGCAAGTGCAGCTATAACATCACCAAGTGCGGACAGTGATTTGTTTATATGTTTTGCTTCGTTTAATCTTTCTCCAGCGGCCTCGGACTTATCCACCCGTTCACTTCCCGCAAGATCCACAAGATGAAGGCATCCTCTTAGAGTTGACCCCGAAGCTATCTCCTTGCCTTGAACATGAACTGTCAACACACTGTGTGAGCGACTACTTCGTTCATTAAGAGCAGTAGACCCAACTGCCCTGTTCCTGTGGCCAACTCTCATCAAATCCAAAACGTCCTGTGCACACTTCACTGGAACTAAATTTGCATCTGGGATGTTCAGTCCATTTACATGAGAACTGTTTCGTATCTCTAATCTTTTGTTTGCACCATCAACCATCAATAGATCTCTCACTTGCTCATTGTATATTTCGATCATCTGAACTTTCACATCATATGTGGTAGTATCTGCTCTATTTTGCGAAATAGCAAATAGATCATTAAGTGACCGGTAGTTCACGCCCCAGGTTTCCTCTGTTGTAATATCTGGACCGCTCATGGTATATGTTTTTCCAGATCCTGTTTGACCGTATGCAAATATGCATACATTGTACCCATCCATCACAGATCTGATCAATGGCTGTGTATCAGCAAAAACCTCAGATTGTGAAGCATTAGGCCCGAATATTTTGTTGAATGAGAACATCTTCCGCCCTTCCTTTCCTTGCTTTTGAGGGTTCACAATCATTATCTCACCATTCTCCCCAATATGATCAACGGTAGATCTTTGATCAGTTTGCATTTTCAGGAAAGGTTTCACTCTACAATATACACGAATGCTACCTTTAAGATCTTGAACTTGATTGTACAGCTTACGATTTTCCTCGAGTAACTTGTGGTAAGCATTGTGATTATGAGCCTCAAAATAACTTTCTAGCCTCCTCAAGTCTTCCTCCCACTGAGATCGAGTTGATTCAACTTGAAGCTTCATCTCGTTGAAAGACACTTTTAGCTTCTCCAGCTCTTCTTGTTGGTGTTCAAGTCCTCCTCCATCATCCAATTGTTTGCGGCGACCACAAGGTAATCGCAGTGAGGTTAAGAAACACTCACTAGTCTCCTTCATAGACTTCGAAATAACTTCAATCAATTCCTGTTTGGAGTGAGCACCATTTTCATCTTTCATCATCTTCCTTAGAAGTGA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0265900.1 | 4 | 23369031 | G | T |
| Osa04LNT0265900.1 | 4 | 23369481 | A | G |
| Osa04LNT0265900.1 | 4 | 23370409 | G | T |
| Osa04LNT0265900.1 | 4 | 23371658 | A | G |
| Osa04LNT0265900.1 | 4 | 23372076 | A | G |
| Osa04LNT0265900.1 | 4 | 23372317 | G | A |
| Osa04LNT0265900.1 | 4 | 23372381 | C | A |
| Osa04LNT0265900.1 | 4 | 23370492 | A | G |
| Osa04LNT0265900.1 | 4 | 23370548 | G | A |
| Osa04LNT0265900.1 | 4 | 23373055 | A | T |
| Osa04LNT0265900.1 | 4 | 23373523 | T | A |
| Osa04LNT0265900.1 | 4 | 23373688 | C | T |
| Osa04LNT0265900.1 | 4 | 23374019 | A | C |
| Osa04LNT0265900.1 | 4 | 23374454 | G | A |
| Osa04LNT0265900.1 | 4 | 23375432 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0265900.1 | osa-miR5542 | Cleavage | 4.5 | 17.137 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR5807 | Cleavage | 4.0 | 6.932 | 1 | 24 |
| Osa04LNT0265900.1 | osa-miR6245 | Translation | 5.0 | 16.165 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR6246 | Cleavage | 5.0 | 17.154 | 1 | 23 |
| Osa04LNT0265900.1 | osa-miR5512b | Cleavage | 4.5 | 12.458 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR6253 | Translation | 5.0 | 20.157 | 1 | 22 |
| Osa04LNT0265900.1 | osa-miR6254 | Cleavage | 4.0 | 15.818 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR167a-5p | Cleavage | 5.0 | 21.79 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR167b | Cleavage | 5.0 | 21.79 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR167c-5p | Cleavage | 5.0 | 21.79 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR168b | Cleavage | 3.5 | 14.885 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR168b | Translation | 5.0 | 8.194 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR166g-5p | Cleavage | 3.5 | 18.836 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR166i-5p | Cleavage | 3.0 | 18.836 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR444b.2 | Cleavage | 4.5 | 12.422 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR444c.2 | Cleavage | 4.5 | 12.422 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR531b | Cleavage | 3.5 | 24.791 | 1 | 20 |
| Osa04LNT0265900.1 | osa-miR1860-5p | Translation | 4.0 | 15.932 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR1861e | Cleavage | 4.0 | 18.749 | 1 | 22 |
| Osa04LNT0265900.1 | osa-miR1861k | Cleavage | 4.0 | 18.749 | 1 | 22 |
| Osa04LNT0265900.1 | osa-miR1861m | Cleavage | 4.0 | 18.749 | 1 | 22 |
| Osa04LNT0265900.1 | osa-miR2055 | Cleavage | 5.0 | 23.077 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR2055 | Cleavage | 5.0 | 18.151 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR2099-5p | Cleavage | 4.5 | 22.703 | 1 | 22 |
| Osa04LNT0265900.1 | osa-miR2118l | Cleavage | 4.5 | 16.906 | 1 | 22 |
| Osa04LNT0265900.1 | osa-miR2118l | Cleavage | 5.0 | 24.699 | 1 | 22 |
| Osa04LNT0265900.1 | osa-miR395x | Cleavage | 5.0 | 6.905 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR5512a | Cleavage | 4.5 | 12.458 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR5806 | Cleavage | 4.5 | 17.518 | 1 | 21 |
| Osa04LNT0265900.1 | osa-miR438 | Translation | 5.0 | 21.489 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0265900.1 | 4 | orl1 | Morphological trait | Culm/leaf | S10628 | C377 |
| Osa04LNT0265900.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0265900.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0265900.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Osa04LNT0265900.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0265900.1 | 4 | qDLR4 | Resistance or Tolerance | Other soil stress tolerance | RM3524 | RM3866 |
| Osa04LNT0265900.1 | 4 | qDLR4 | Resistance or Tolerance | Other soil stress tolerance | RM3524 | RM3866 |
| Osa04LNT0265900.1 | 4 | d11 | Morphological trait | Dwarf | nan | nan |
| Osa04LNT0265900.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0265900.1 | 4 | nan | Morphological trait | Culm/leaf | RM3337 | RM3785 |
| Osa04LNT0265900.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)