>Osa04LNT0266800.2

GCTTCTAATAATTTGTGTGGTTTTATTGTAACTTGGACAACAAAACGTGTAGTTTTGTGAAGTTTACTCTTGTATAGCCTAAACAAAGAAGCACATCTCAAACTCATTTCATCTGTGACACTCAATTTCGATGTTCAATGAAAAAAAAGAAGGCAATGCGTGCGACTCTTTTCATCCCTGTTTCATTTCTCGGAGGAACTTCTTGAACCAATGGGCTGAATTCTTGGGGTGTCTCTTCATCCCATCATCGTAATCCACAAAGTTTAGCCCAAACCGGAGTGTGTAGCCATCCGCCCACTCAAAGTTGTCAAGCAGAGACCATGCAAAGTACCCCTTCACGTTTGCTCCATCCCTCATAGCATTTCGCAGGGCGAGAAGGTGCTTGTGATAATATTCTATCCTCGTATTATCATTCAGGGCCTCCTTGAGTGGCATGGTCTTGTTATTGACTTCATCAACACCATTTTCAGTAATAAAGATGGTAGGATTGCCGTAGTTTTCCTTGATATAAAGCAACAATTCACGGAGCCCTTGAGGGTATATATGAAGCCAAGATGAAGCAGCCTGAGGACCAATGAGAGTACCGTTTCGACTACCGGTAATCCTAGCGTGGAAATCAGTATTGTAGCTGTTCTTAAGACCATACGATGGAAGAACATTCTCAGCATAGCTTGAAGAGTAGTAATTAAGTCCAATGAAATCAAATGCACCCTTGACCATTTCAGATTGCTCTTTGGTGAACTTTGGCAAGCGATTTCCAACCAATTCTCTCATGTTTAGGGGGTAGTCCCCTCTAATGAGAGGATCCATAAGCCATCCAAGCACGAAATCTAGAACACGTCTTGCTGCATCCTTGTTGGTTTTGGATGGGGAGAAGGGAACATACCACTGTGAGTTCACAATTATTCCAATCTTCCCCTTTTGTAAGGCCTTTGCGGATCTTCGATGTAAATCATTATCATGGATGAACTGCGACTGCCTGACAACTTCTTCAGTGAACTGATATTTCTCTCTGTACAACCGAACAGTTTCTGCGTGGGCAAGTAGTTGGTGATGGCATGCAGTGTAAGGCTCCCTTCCTGAATCTCCAACGCTGCATTTTCCCATCTCCCAGGGTGAACACCGGCCCGGGGCATAGGTGCCAGATGCATAGGCCTTAGAGCAGAAGATCCAAGGCTCATTGAAGGTGATCCAATGTTTCACTCGGTCACCAAACTCTTTGAAGCAGATTTCAGCATAGTCCTTATAGTCATTTATGATATTAGGGCTAAGAAATCCGTTGTATTTATCTTCCAGTGCCTGAGGTGTGTCATAATGGAAAAGGGTAACAAATGATTGGACCCCTGCAAATGTATTAAGATTATTTTGCATTTTGGAAAAGGAAATCTGGCATACCAAGGGATGGAGCTAATGGTTTCCACAAGTTGCATCTAGCCACTGAACTTGAAACTAAACAGTGAAGATTAGACATGAATGCCTTTCAATAATAGCTCATTGATCAAATTGTTGTAGTAGTTGATGCCTTCTATGTTGACTCCACCATTCAGACTTCCATTTGGAAGAATTCTTGACCATGAGATGGAAAACCTGTATGCATCCATTCCCATCTCCTTCATCATGTGCACATCTTCCTTGTAGAGATGGTAGGTGTTGTCAGCCACATCCCCGTTGCTTTTGTCAGCGATTTTATCTGGATGCTGATATGTGAAGGTGTCCCAGATGCTTGGTCCTCTGCCCCCCTCTGCTGCTCCACCCTCGCACTGATAGGACGCGGAGGACGTCCCGAAGATGAACCCCTTGGGGAAGCTTCTCCGGCTAATCGGCGGCAGCTCGCCGGCTTCGACGCAGGCGGCAGCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAATACCGCCGGACATCGCCACTGCCCCGGCAACCGCCATCTGAACGAAGCTTGACCTGCAATTCTGCAAAAGAAAGAGT

Explanation	CPC Score
noncoding	-1.17436

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0266800.2	4	23717180	A	T
Osa04LNT0266800.2	4	23718355	A	G
Osa04LNT0266800.2	4	23719966	T	C
Osa04LNT0266800.2	4	23720471	A	G
Osa04LNT0266800.2	4	23720507	T	C
Osa04LNT0266800.2	4	23721170	T	G
Osa04LNT0266800.2	4	23721275	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0266800.2	osa-miR5528	Cleavage	5.0	14.096	1	21
Osa04LNT0266800.2	osa-miR530-3p	Translation	5.0	16.959	1	21
Osa04LNT0266800.2	osa-miR1438	Cleavage	4.0	16.935	1	22
Osa04LNT0266800.2	osa-miR2097-5p	Cleavage	4.5	14.754	1	22
Osa04LNT0266800.2	osa-miR1862f	Translation	5.0	13.821	1	20
Osa04LNT0266800.2	osa-miR1862g	Translation	5.0	13.821	1	20
Osa04LNT0266800.2	osa-miR5083	Translation	5.0	12.832	1	20
Osa04LNT0266800.2	osa-miR5524	Cleavage	5.0	15.063	1	21
Osa04LNT0266800.2	osa-miR5524	Cleavage	5.0	17.182	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0266800.2	4	nan	Morphological trait	Culm/leaf	RM3337	RM3785
Osa04LNT0266800.2	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0266800.2	4	orl1	Morphological trait	Culm/leaf	S10628	C377
Osa04LNT0266800.2	4	qChla4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0266800.2	4	qChlab4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0266800.2	4	qPH1-4-1	Morphological trait	Dwarf	RM241	C2807
Osa04LNT0266800.2	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0266800.2	4	qDLR4	Resistance or Tolerance	Other soil stress tolerance	RM3524	RM3866
Osa04LNT0266800.2	4	qDLR4	Resistance or Tolerance	Other soil stress tolerance	RM3524	RM3866
Osa04LNT0266800.2	4	d11	Morphological trait	Dwarf	nan	nan
Osa04LNT0266800.2	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus