© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0267500.1
ATCGCCCGTGTCTTGTGCTTTTTCCATTCTCGCGAACCTTCCACACACAGACCAGGAGCTTAGAATCTCACCCAGGGCCCCCGGCCGAACCGGCAAAGGGGGGCCTGCGCGGTCTCCCGGTGAGGAGCCCTAAGCTCCGTCAATATTAATAGTGTAGTATATGTTTACAGATAACTATTGTATGAATTGGCTATTAAATCGACTATAGATGATTTAGAGCTAATAGTTGGCTATATACTATTAAACTTGCTCTAAGATCATAGTATACATTAATGATATTCTTCCGGCTCCTCTGATCTTCAATAACACACAGTAAATAGCCCCGAAACCAACCAACAAACTTTTTCTCGCCATCAAAGGCCCAGGACCTCTACCATCAGCTTCATAGAATACACAGCTTCAGGTCTACCAATAAATTAGATCTGCTTCCCCGTCCTTTTTGCCGTCCTTAATCTTAAACTCCAGAAAATGGCATGTTGAATGTTGGCAAGATTAAGAAGCGTAAACTGCACAGATCCTGTCAATTTGAAGCCTTGAAATTTTCTGGATTTTTATCCTGGTCTTCTGGAGAGGTAGATCATATGTTTATCCTGATCTACCTGGCACCCAAAATATATATAATTGGACATGTGATAGGCTTCTGAATCTAAGGTATGTATGTCGCCGTGAACCTCTGTGTGCGACTTGAAGGATGGCTCCATTCTCGAGCACATGCGCTCCCAGGTGGCATAAATGATGGTGCTCTCCCCAGCATAATCAGCTCATAGACAAAAGAATAATACCCCAAGGATCCGGCAGCTCTTCACCATTCTCTTCAACCTTCAAGCCTTCATGAAATGCTCCACAATTTGTTGACTTAATCATCAAATTATTGACCATGGAATTACTGCAAGCGCAACAGACCTTGACATCCAACTGAGCCCAATAATCTGACTTCCTTTAAGGCCAAACCAAAGAATGGATGCTACAATCCTACAAGCTTGCTTAGCCCAGCAACAAGAGAAGACCAACCATAAAATTTGCTGATGTCCTCAAGTACCATGCACAAACAGTAGGCTGCCCTGAATTCGCAGACTCTCAACAAGGTTAACACTTTCAGCAAACTTCCCACATTTGTGAAAGTACCGGAGTAAGCATGTCATACTGATGGCATCAAGGTTGATTCCTTCCACATGCATACGATAGAGAACCATACGGATAACTGAAGCATTCTGCTGCCTGCAGGCTGCAGAGAGGATAGTGTTGAAGGAGACTGAATCACAGGGAACACCAGTAGAGCTAAAATGGTCCAACATCTGCAATGCCCCCTGAAGATCCAGCTCCATACAGAAGCCTTTCAGTATAGTGTTATATGTTGTAGTAGATGGTACAAGTCCTCTCTCCATCATTCCACTAACCAAAGCTAATGCTTTCTTAACCTGCCCATCACAGCATAAGCTATGGAGGTATATATTCCAAGTGATAATATCCACATGATTGCTCCTGTTACATACCATTCGTATAAAATTCTGACAGGTCATGACATCCCCAGTTTTCAGAAAGCCAGCAGCCAGAGAAGAAATGGTGAAATAGTCAGGGACCAATCCTGCCTCCTCCATCAAATCAACAATCACCCGAGCTTCTGGTATTCTATCTTCGCAGCAGAGTGCATGGAGTAGCACATTGCATATGGTGCTATCAAGACAACAGCCATTTTTGCATGCCATCCTGAAAACATGCATCGCAGCATCAATCTTACCATCTCTACAGAGGAAATTCACAATTACGGTATATGTTACAACAGAGGGTTTGCACTCTTCATCGCACATCTTCTCCAATGCCCTGTATGCGTCGGCCCACATCTTCTCCTTGCATAATCCTAAGACCAATGCTGTATACGAATAAACGTTTAGAGAGAGTCCTCTCTTCTTCAAGTTACAGAACAGAGTCAATGCCTTATTGCTGCAACCTGACTTGCAAAGACCAAACAGAATTTGGTTGTACATATACACATCTGGCACAAACTTCCTATTTACAAGCACCATGAAAACCTCATATGCAATCTCAGCGCTGCCACTTTTCAATAGAATCGAGACAATGGCATTGGCGATAGGGAGAGTCGGAAAGTAACACAGACTGAGCATTAGGTCGAACACCTTCAGTGCAAGTTCAAAGTTAGAGCCACTAACAGCTTTCTTGATGAGTCTATCTACCGTGGTGAACGAAGGCACGAATCCGCAGCGAGACCACATCTCTTCGAGTACCGCGTGCGAGGCGTCGAGGTGGCCTAGCCGGAGCAGCCCGTTGAAGGCGGTATTGAAGGTGAGGGCGTTGGGCGCCGGGCCGACGGAGCGCATGTGACACAGCACGGCGGCTACATGCTCCGCGGCGGCGACGTGTTGCGCGGCGGCTTGCCCGGACCGGAGGTAGGCGTGGAGGAGGGCGTTGTAGTCGTGGGCGCCTGCGGGCGCGGGCCGGAGGAGGGCGAGCGCGTCCAGCGCCGCGGCCAGGTTCCCCTCGGCGGCCGACGCCCGCATGCGGCGGCGGAGGAGCGTGGCATCCGCGGGGCCGTGGGATTCGGGGTCCACGTCGGAGTCGGAGGTGGAAATGGAAGCTTCGACGGGGGAGGCGGCGGCGGTGGCGAGAGCGGAGCGGAAGCGCAGGCGGACGCGGCGGCATGAGGCGAGCATAGGATGGGGGGCAGTTCCTACCAGCTGCGATGTGATGTTCGATTCATGAGGAGGACGGTGATGCCGGAGGCGGAGGTGGTGGTGGTGGTTGGGCGGCGCCGCCGACGCGCGGGCTGTGGAGGAGCGGTGGCGGCGCCGACGGTGGCGGAGGGAGGCAGGAAGCGGCGTGTGGAGGAGGAGGCGGCGGCGCCGCGTCGCGCGTCGGCGTGTGGGCGTGGAGGAGGCGGACTGGCGGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0267500.1 | 4 | 23813663 | G | A |
| Osa04LNT0267500.1 | 4 | 23813687 | G | A |
| Osa04LNT0267500.1 | 4 | 23814896 | T | C |
| Osa04LNT0267500.1 | 4 | 23816085 | T | C |
| Osa04LNT0267500.1 | 4 | 23816340 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0267500.1 | osa-miR5797 | Cleavage | 4.5 | 13.234 | 1 | 21 |
| Osa04LNT0267500.1 | osa-miR396c-3p | Cleavage | 4.0 | 21.893 | 1 | 21 |
| Osa04LNT0267500.1 | osa-miR810a | Translation | 3.5 | 11.601 | 1 | 21 |
| Osa04LNT0267500.1 | osa-miR1429-5p | Cleavage | 4.5 | 19.585 | 1 | 21 |
| Osa04LNT0267500.1 | osa-miR1864 | Translation | 4.0 | 12.383 | 1 | 24 |
| Osa04LNT0267500.1 | osa-miR5071 | Cleavage | 4.5 | 18.801 | 1 | 21 |
| Osa04LNT0267500.1 | osa-miR5518 | Cleavage | 5.0 | 9.622 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0267500.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Osa04LNT0267500.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0267500.1 | 4 | d11 | Morphological trait | Dwarf | nan | nan |
| Osa04LNT0267500.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0267500.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0267500.1 | 4 | nan | Morphological trait | Culm/leaf | RM3337 | RM3785 |
| Osa04LNT0267500.1 | 4 | orl1 | Morphological trait | Culm/leaf | S10628 | C377 |
| Osa04LNT0267500.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0267500.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)