© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0268400.1
AGTTCAAGGAGCAGAAAAGCCGTGTGGTAACATGAGAATCAGCCAAGTGCATTTTTCTTTCCACTACATGGTATCAAGGCTGGTTGGGATACTAATATGCAATGCTCAAACTCCAGGGCATGCAATCAGGTGGATGAAAATAATGGAAAACCAAAGCTGTCCGTGTTTCTTCTTTCAAGTATCAAGTTCAGTCTCAGAAAATGTCCATTGGCTGGCTATCAGGAACCTCGGTGTCATCCAATTGCACGGCTTGTTTCTGCTTTGCCTTCTTGTAACTACAAGAGCCTCTGAGGATGGAGCCAAGCCCCCCTTTGCGAGATTTCTGTGATAGTGATGCATTGCCATCGTCATCAGGCTCGCCACTATCATGGGCTGCAGATGAAATACCTGAGTCAGCTGATGAGGATGCATCATCTGAAGAAGTTTCAATGGCAGCCTTTTCACTTCCGATGCCCAATTCATCATCAGAGCCATCACTGCTGGCATCATTGAAAATTGTACCAGTTCCTTTGTCTTTTTTGGATTTGCCACTGGTTTGCTCATACCTTTTTCTTGGAACTTTCCGAGCTGCTAGTCGAAATCGACTATTTTGTGGTGTGCCCTGTGTGCTGTCACTTGATGCTGGTGGGCTCATGGAAAAGCTCTTAACAAGATTTCTTATAGACTTAGAATTTGGATCTGCCTTTCCATTGCTAAACCTGTCAAAATTTTTACTCTCAGCATGGGGCTTTGTCTGAGAACTGGACTTTCTTTGTCCTTTGTCCATAAGCGCATGATCCTTATCAATTGGCAAATTACCCTGGTTATCAGAACCACTCTTGCTTTGGTTGAGCTTCTTTACTCTGCTATCACATGTGGCATCTTTTGGGTCCTGTGTCAGCATACTACTGTTCCAAATTACATTATTGTTATTCTCTTTCCTGTCATGCTCCATTCTTCCTTCCTGTGCAACAGAAAACGAAAAATCTTGTACACCATTGTCAATGTCTCGATGATCACTGTTAGGATCCACCTTCTGGGGAACTGAATTGAGCAAATCTGATTTCTTTTTTCGCTTCTTCTGCTTACCTTTCTTCACATTTCCATCTGCTATGTCCACATTTTGTGTTGAATCAGATGGCACACCAACATCACCAGGTGAATTATTAGTTGATGTAGTTTTTTCTATATGATGCGATTGTAGCAGATCATTTGGTTTGGCATTATCAGCGAGCTGAGACTGCAGATCCACTTCTCTTTTGTTACTTTCATCCTCAACTTCTCTTACAGTTTCCTCTCTGCCGTTTTCTTTGTTTTCTGCAGAAACATATTGATCATTAGTCCCTTTGGGGCTAAAATGGTCGAGGAAGTTGATTTTTTCATTTGGTTCAACAGCAACAGCAGATTTTTTAGGACTAGCTGTAATATGTTCAGCCTTGTAGTTCATCAAATCTACATCAGAACCATGATCCAAAGAGGCATTCTGACTCTGAAGTCCAGTCTTGGAAGATTTCTTCCTTCCCTTTAGAGCACTAGGGGTTAAAGTTCTGAGAGCTGTGGCATCTTCCTGAACTGCAAACGATTGTGTTGGAGCTCCTACTGCAGTGTCATTACTATGGGTCCCACTCTCACCAATGTAACTTACACATTTGCCCTGGCTGTCCTTGGCGGATTTACTATCTTCAAAATGTGCAGAAGGGTTAGCCTTTTGGACTTTAGGTGTACGAATCTTGGTAGACCTGCTTTTCTTCTGTACATTTTCAACAGTACCTGCAGGACCATCAATTACAGACCCTCCTTGAACTAAATCTGCTTTGGTAGCATTTGATCCGTTTAAGTCCTCAATAGCAACCTGGTTAACTTGCTCATCCAAAGACTGAATAGTTTTATCATTATCTGTAGGGACATGCTTTAGGGAAATCTTCTTTCTCTGACGTTTAGTGGCTTTGTTTTTGTCATCATCTTGCACTACAACATTTTCAGTTGAAATATTATTAGAAACACTTGTGTTGTCAGAAGGCCTCAAAGAAACAGATTCTCTTAGTTCTGCATTTGCATTTTCATCAGGTACACCACCTGAAAAATGAGACGAGTCATGTGCAGTTGGCAGTACTTCCAATTTTTCTCCTCTAGCCTTATTATGACTAGGTGAGCTGATGGGAGCATCAGAGTGAATTGCCGCTGGATATTTCAGAGGTAACACTGCACTAAGGGCACCTTTATCCACAGTGTTTCCATGCACTCCAAGTACATCGCTGCCCTGGTGTTTCTGTTTTGATAACTGACATTGATCCAAATCCTTACTTGTGTTATCAGTGCATCTTAAATCTGCCAATACCTCATCAATAACTTTTGCTGCTGCTACATCCAGGCTTACGTCAAACTTTGTTTGGTGACCAATTGTTCCTACTCCTGTTGTGGCCGGTGTTATTTGCTTTGGATCTAAGGGAGAAACATTTGTGTTTTGTATTGAGATTTCATTTGTAATCAATGATTTTGTCACATCATGAGTAGGACCAACATCCTTTGACGACTCTGAGTGATGTTTTGTCTTCTTCTTCTTCTTCCGCCTCCCATCACCACATGGGTTTTCTATTACATTAGGACCCTCTGATAGCATATTGCTTGAGATATGTTGATCAACAGGGTCATTAACAATCTTGCCTTGAGTAGCAAGCTTATCTGATTTGACTAAATTCTCTCCATACCCACACTGATCTTTTTCTCCAGAAATATCCAGAGACTCCATGTCAACAGAACTAACCTTTTTTGCTTTCTTGCGCTTCTTCTGTTGAGAAGTATGGCCAACTGACTGTGTCTCCTCCAAGATGCTTTTGCTGGATTTCTCCAATTTACTTGTTTCAATACCACTTTCATCATGTCTTACTTTCGTAGATTCTCCTGCACAGGCAACAAGTTCAGAAGAATTAACCATATCTCCCATGGTTGGATCTTTATAGTCCTTATGTACAAGGTCATCAATCCCTTTATCAGCAACTGAATTAGTAGTTGCCTGGGCATCACTCACAAACTGAACATGTTTAGTACCACACTGATCTTTTTCTCCAGCAATATCCAGAGACGCCATGTCAACAGAACTTACATTCTTTGTTTTCTTTCGCTTCTTCGCTACGCTTTTGCTTGTGCTGGCGCTCTCCATTTTACTTGTTTCAACAACACTTTCATCATGTCTTCCTTTTGTAGATTTTTCTGCACCGGCTACAACTTCTGAAGAATTAACCATATCTCCCATGGTTGGATCTTTGTATTCCTTATGTACAAGATCATCAATCCCTTGATCAGCAACAAGATTAGCAGTTGCCTGAGCATCACTCATCAACTGAACATGTTCAGTTCCACACTGATCAGCAATGTCCAGAGATGCCATGTCAACAGAATTAACCTTCTTTGCTTTCTTTCGCTTCCTGCCTTGAGAAGGATTGCCAGCTGACTGTATCTCCTCCAAGATGCTTTTGCTTGTGCTGGCTTTCTCCATTTTACTTGTTTCAACAGCACCTTCATCACGTCTTCCTTGTGTAGGTTTTTCTGCACCAGCTACAACTCCAGAAGAATTAGTCATATATCGAGTGATTGGTTCTTTATATGCCTTATGTACAAGATCATCAATCCCTTGATCAGAAGCCAGATCAGTAGCTCCCTGAGCACCACTCATCAACTGAACGTGCTTAGTCCCCTCACATCCACTATTGTCTCTGCTTGTCAATTCGACATTGTATGCACCATCACCTTGCAGCTCTTGGTTGTTTTTCTGAAGCAGGACTTGACCAATGGATCCTGGTACCTCCACTGCTCCACTTGATGGTTTCACCATCTCCTGAGCAGAAACAACTTCCCTGGTAGCCTCTGGTTCACTCCTTTTCCTTTTCTTTTCCATTCCAGCAGTGCTGGAATTTTCCAGCCCAGGAAGACGACGGTTTGCAATTTGTGGTATCAGCGCAGGAATCTTAAGAACACACTTGTCCACATGAACTTCAGCTCCAGGACAACCTTCACTGGATTTTCCTCTATCCTCCATTGAAGTGTCTCTGCAACAGTGACTATCTGTCACTACCACTGTCATCTTAACATGCAGAAAGCATCCAGCCTTGATTTTGGCGAAGGCGCTCCTTATTGTCATCAAATCAGAGAGGTGATACAGTGCACCCTTCCGTCGCACCTGGAAGGATTTGACGGCGACGGGGCCGATGTCGGGGAAGGCGGTGGCGTGCTCCGCGGCCACCGTCGACTTGAGGTCGCGCATGGTGGAGTCGCCGGCGGCGAGCAGGGCGAAGCGGGTCCCGAGGTCGGTGTCGATGAAGAGGGAAACGGGGGCCTCCCCGCTGTCGGAGTGCGCATGTGGCAGCGGCGGCGGCGGCGGCGGCGCCGAGGCGGCCATTGCGGGTGGTGCGGCCGCCGCCAGGGAGGAGGGAAGGGGAAGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0268400.1 | 4 | 24164041 | A | G |
| Osa04LNT0268400.1 | 4 | 24164427 | A | C |
| Osa04LNT0268400.1 | 4 | 24165388 | A | G |
| Osa04LNT0268400.1 | 4 | 24165566 | A | C |
| Osa04LNT0268400.1 | 4 | 24166721 | T | C |
| Osa04LNT0268400.1 | 4 | 24167274 | A | G |
| Osa04LNT0268400.1 | 4 | 24167254 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0268400.1 | osa-miR5536 | Cleavage | 4.5 | 15.083 | 1 | 22 |
| Osa04LNT0268400.1 | osa-miR5536 | Cleavage | 5.0 | 19.242 | 1 | 22 |
| Osa04LNT0268400.1 | osa-miR5806 | Cleavage | 4.0 | 15.254 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR5806 | Cleavage | 5.0 | 5.81 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR5817 | Translation | 5.0 | 16.921 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR5818 | Cleavage | 4.5 | 18.879 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR5819 | Cleavage | 3.5 | 11.905 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR5837.1 | Translation | 3.0 | 11.062 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR6248 | Cleavage | 4.0 | 7.858 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR7692-5p | Translation | 4.0 | 15.243 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR7693-5p | Cleavage | 3.5 | 22.41 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR160a-3p | Cleavage | 5.0 | 15.869 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR160a-3p | Cleavage | 4.5 | 16.56 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR160b-3p | Cleavage | 5.0 | 15.869 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR160b-3p | Cleavage | 4.5 | 16.56 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR160d-3p | Cleavage | 5.0 | 16.56 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR396c-5p | Cleavage | 5.0 | 24.453 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR399e | Translation | 5.0 | 14.616 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR399f | Translation | 5.0 | 14.616 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR399g | Translation | 5.0 | 14.616 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR415 | Cleavage | 4.5 | 16.158 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR530-3p | Cleavage | 5.0 | 12.81 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR530-3p | Translation | 5.0 | 19.741 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR1426 | Translation | 5.0 | 18.62 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR1853-3p | Translation | 4.0 | 21.489 | 1 | 22 |
| Osa04LNT0268400.1 | osa-miR1854-5p | Translation | 5.0 | 9.779 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR1863a | Cleavage | 5.0 | 18.937 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR1864 | Cleavage | 5.0 | 22.912 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR1882e-3p | Translation | 5.0 | 15.186 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR2868 | Cleavage | 4.5 | 20.206 | 1 | 20 |
| Osa04LNT0268400.1 | osa-miR2877 | Cleavage | 4.0 | 24.933 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR1863b | Cleavage | 5.0 | 18.937 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR2873b | Translation | 4.5 | 22.22 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR2873b | Translation | 4.0 | 13.109 | 1 | 21 |
| Osa04LNT0268400.1 | osa-miR5076 | Translation | 5.0 | 10.996 | 1 | 22 |
| Osa04LNT0268400.1 | osa-miR5150-3p | Cleavage | 3.5 | 23.518 | 1 | 24 |
| Osa04LNT0268400.1 | osa-miR2275c | Cleavage | 3.0 | 10.686 | 1 | 23 |
| Osa04LNT0268400.1 | osa-miR2275c | Cleavage | 5.0 | 13.372 | 1 | 23 |
| Osa04LNT0268400.1 | osa-miR2275c | Cleavage | 5.0 | 14.186 | 1 | 23 |
| Osa04LNT0268400.1 | osa-miR2275c | Cleavage | 4.5 | 15.993 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0268400.1 | 4 | nan | Morphological trait | Culm/leaf | RM3337 | RM3785 |
| Osa04LNT0268400.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0268400.1 | 4 | orl1 | Morphological trait | Culm/leaf | S10628 | C377 |
| Osa04LNT0268400.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0268400.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0268400.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Osa04LNT0268400.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0268400.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)