© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0268600.1
ACGTAGTAACGAATTTCCGATGAATAGAACTGTGTACAATCTCTCCATGAATGCTTCCGAGGAATCGCAAATACAGTACGTTGGAAAATTTTAACCATGGATTAAGCCAACCTACACAGGTAGTTATAGGCACCTCGTGTGGATTAATCGATCGAGCTGACCAATGGCTCAGAAAGGAAAAAATCCCAGATGGCTTAAAGCATTGGCCTAAACCACTCTCTATTTCGATATTTCGAACCAAAGCTATCTCATGCCACTCTTCTGCTTGCTTTTCCTCGTGTCTTTCTTGGAACTAGTGGAAGCACTAGCCTCTTCCTCAGCTTTCTGTTCAGCCTCGAGCACAGCCAGCTCGTCGAGTATGGGTTTCAGTTCCTTATATCGAGTTTCGGCAAGATCAAAACCATCTTTGCGGAGCTCCTTTCCAGTGTGTTGAGTGTGCTCATATGCAGCCATCTGCCAGTACATATCCGTTCTCTTGTAGAAATCTTTTAGTGACTCTCCTGGCTTTAAAAGTGTGAATATGGGAATTAGTGATATATGGTTTTAATTGTTAACTGTGTGTAACAAATTATCAGCCAAGAGTTCCTCTGAGTAAACAAAGTATATGTACTTTGTCGGAACAACTTCAAACAAATTTAGAACAAAAAAAATGTTGATTACAACATCACCATTGGAGTCCTTTGAGAATCAGAAAGACCGAGCATAACCCGAATTTGCTCTATCCGAGCACGCTTCTCTTTTCTTCGCAAGTTCTTACGTTCACCCTTTATTAGCGATACAGCAGTGGACATATCGACATTCTTCTCGGCATCTTCATCAGACTCTTCATCATCTTCATCGGTCTGATTAGCGTCATCCTCGCTATCATTCTCATTATCATCATCATCATCATCTTCATCATCCTCATCTTCAGAAATTTCTAGCCATTCAGATTCAGATGCCGGTATGATACACTTCCACTCATCTAGTTTGCTAAGGTTAAGTGAATACATATCATCAAGAGTAATTTCTCTATCTTTCAATTCCATCATTCCTCCATATAAATAGAGTGTATCTTTCCCTACAGCCAAGCATGCATTGATCCGACCACCGGGTTTCACTGCCTCTGGGAGTACTTCTTGTGTTGTCGAATCAGAGAGAATATCAGAGCTATTGCCTGAGCCAGCTTTATTTAAGGTTAGACTCTTGGTCAAGTGATTCGAAACCCCATGGACTTCGGATTGCCCTCCAGTAGTTTCTGAGTCCTCCATGATCTCATCCTCCTCATTACCAAGATTATCTTCCACATTGTTCGATGGTTCTTTTCTTTTGATGTCCTTTGTCTTATTTTTAGCAGGCTTGTCTTTCCTGAGCTCTAAAGGATACCAGCGATGGTTGTCCAGCTGGAAACCATAGAGCTCATTCATAAACATGCTCATAATGACATCCCCTTCAATTTCCATATCTACCACACCACCGAAAAGAACAGCCCTTTTCTTGTGAACGCACATAGAAAACCCAGCTCTGGGGCCAGGTGGCATCCCAGTTTTCTTAACCTTATTCCACTCCCAAGTACGAGGATCAAGAGTCCACATATCTGCATGAACTGTTCCTTTTTCTGATGCAGATTTGTCAGAAGAAACTACTTCTTTAAAATATCCGCCATACAGATATATCTGATCTTGGTATACCATTAGCTGAAAGCCACTTCTTGGACTTGGCCACAAGCACCCAGGGCGAGGCTTGATCTCCTCCCACTTGAAATTATCTAAATCAAAAACATGTAAGTCATTGTAGTATCTCACTTCCCTAAGAGTGTCATAAAAACCACCAAATAGCACGATCTTGTGCTTATAGAGGACCATCCTGTGCCCTGAACGTGCACTTGGACAACCCTTCGCAAGAATTTGCTCCCATTGATTTGTTTTTAGATCCAATGACCAAAAGTCCTTGTAATGATGAAAACGTTCTTGGTTTGGCGAAGTGAATTCCCCACCAAACATGTATATATTATTCTTCCAGGCAACTGTTTGGTGAGCACTTCGTGGAGGAGGACTGTTAGGACTAGATACCAACTTCCACTCATTTTTCTCTACATCGTAGCGATAAAGATCACCATAAACAAAGGTCTTGCTGCCATTGTAGAACTCTCCTCCATACAGAACCAATTCTGTATCTTTCAGGGGATTTATTGTAAGCGAGCAATTGGACCGGGGAGATGGTGCAGGGACATTCTCATCTATATGTACCTCCTTCTTCTTAGCCTCCTCCTTTTGTATGCTCCTGAGGATGGCGTCGATGTCGTCCTCCTCGCCGACCTTCCGGGCCTCGCGGCGGGCGCGCTTCTCCTCGCCCTTGGCCGTCTTCCGCTCCGTCTTCTCCTTCCCCTTCCTGGGCTTCTTCTGCTTCTTCCCCATCTCGCCCCGCCGCCGCCGGCTTCTGTCTCTCTCCCCGCGCTCACTTGCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0268600.1 | 4 | 24183752 | G | A |
| Osa04LNT0268600.1 | 4 | 24180936 | C | A |
| Osa04LNT0268600.1 | 4 | 24182023 | T | G |
| Osa04LNT0268600.1 | 4 | 24182174 | T | C |
| Osa04LNT0268600.1 | 4 | 24182432 | G | A |
| Osa04LNT0268600.1 | 4 | 24183214 | A | C |
| Osa04LNT0268600.1 | 4 | 24183524 | C | T |
| Osa04LNT0268600.1 | 4 | 24184368 | A | G |
| Osa04LNT0268600.1 | 4 | 24184453 | A | G |
| Osa04LNT0268600.1 | 4 | 24184747 | G | A |
| Osa04LNT0268600.1 | 4 | 24186139 | A | C |
| Osa04LNT0268600.1 | 4 | 24186303 | G | A |
| Osa04LNT0268600.1 | 4 | 24186382 | A | C |
| Osa04LNT0268600.1 | 4 | 24186998 | G | A |
| Osa04LNT0268600.1 | 4 | 24181332 | T | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0268600.1 | osa-miR5528 | Cleavage | 4.5 | 16.43 | 1 | 21 |
| Osa04LNT0268600.1 | osa-miR5544 | Cleavage | 5.0 | 13.924 | 1 | 22 |
| Osa04LNT0268600.1 | osa-miR5544 | Cleavage | 4.5 | 9.67 | 1 | 22 |
| Osa04LNT0268600.1 | osa-miR5824 | Translation | 4.5 | 15.3 | 1 | 24 |
| Osa04LNT0268600.1 | osa-miR166c-5p | Cleavage | 5.0 | 19.04 | 1 | 20 |
| Osa04LNT0268600.1 | osa-miR166d-5p | Cleavage | 5.0 | 19.04 | 1 | 21 |
| Osa04LNT0268600.1 | osa-miR390-5p | Cleavage | 5.0 | 16.682 | 1 | 21 |
| Osa04LNT0268600.1 | osa-miR1858a | Cleavage | 4.0 | 11.69 | 1 | 21 |
| Osa04LNT0268600.1 | osa-miR1858a | Cleavage | 5.0 | 21.634 | 1 | 21 |
| Osa04LNT0268600.1 | osa-miR1858b | Cleavage | 4.0 | 11.69 | 1 | 21 |
| Osa04LNT0268600.1 | osa-miR1858b | Cleavage | 5.0 | 21.634 | 1 | 21 |
| Osa04LNT0268600.1 | osa-miR3979-3p | Cleavage | 5.0 | 13.467 | 1 | 20 |
| Osa04LNT0268600.1 | osa-miR5076 | Translation | 5.0 | 13.982 | 1 | 22 |
| Osa04LNT0268600.1 | osa-miR5507 | Cleavage | 3.5 | 12.237 | 1 | 21 |
| Osa04LNT0268600.1 | osa-miR2876-3p | Translation | 3.5 | 17.571 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0268600.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Osa04LNT0268600.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0268600.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0268600.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0268600.1 | 4 | nan | Morphological trait | Culm/leaf | RM3337 | RM3785 |
| Osa04LNT0268600.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0268600.1 | 4 | orl1 | Morphological trait | Culm/leaf | S10628 | C377 |
| Osa04LNT0268600.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)