© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0269100.1
AGACTGTATACCTTTACATCTCTGAATGAATGCAGTATTGGATAAGAAAATGCTGGACAGTGGAAAAAAAATGTCGTAACCATCTTAGTTGATCTCGGTGTTAAATATTCACATTTAAATTTTCACCTGTCAATCAGTCAATCTAGCTAACACGTGTGAATATGTACATCATGTTAACTTGCACAAATTAAAAAATGGATATGAACAAGCAGGAATGGCTGCAGAATAAAGAATGAGAACAAACCGCTACTATCAGGGTGTAGGCCTGCACTAGATGATCAATGTACACGCACAAGGCATTGCCAAGGTAGGTAGGTAGATAGAAATAAGATGTTGCTTTGCTGTATATGAAGTCGTCAGATTTCTTTTGATCCATGCGTCCGGTGCCTGCCTAGCCAGTCTAGGACTGTCAGTAAGCTCAGCGGAATGTAGAGCTGTCGTCACAGAGATCTCATGTAAACAGACATAACTGCTTTCCATAGAAATATGCTGGCAGCATGTGAAAATTTTGCTCCTTCAGTCTTCAGTGAAGCTGCATTGCTCCTAAAGTGGCATTCATATACATTCTCTCTATTTGCTTTCAGCTGTACTGAGAACAACTCTATCCTGGACTCCTGGTCAGACCAAACGTTCTACCGGTGAATCAGGACAACTTGCTGCCGTTTGCGCTTCCAGAACTCTCTGCATTGCATAGTGACACCTCCATGGTAGGTGATCCGTAAACATCGAAGGAGTAACGGCAAGATCAGTGAAGTTCTCCCTTTTTGCAAAAAAAGCTTTATATGGTGGTTCACTTCCCTGCAAGCTCCAGCATTTCCAAAGAGGGAAGAGGCTTCTTCTTTGCCGCTCTATATGAACAACTAGGCCTGGAAGAAACATTTCAGGAGGCTCAACTGGTATATCCCTATAAGATGTGTGACGCTGTTCTGAACCAGAATCGAGCCCATGAAGGGAAATTGTCTGGGCATCACAATCAGTATGTAGACCCTGAGAGCTCATAACATCTATGGATGAATTAGACCCATTATACCCATTGATGCCATTTTGCAAAATTGGGAGGTCTGGCTCAGAAGTACAAGGTGCATCCTGGTGAGGAAACCGTCGTTCAGTAGATACTGCCCTCCCTTCAAATGTGTGGTGCCTAGCACTATAGTCCTCCATTATGCCACCATCAGGACCATTATCATGATACTTGTTAACATTCAAAATTCTGCGAGCAAGTTTCTGTATCATTGCTGTATCAGCTGGAGAGTTATCTGAAAGAGCCCTTATTGCAGCAGACCGCAGCCTCAGAATTGAGTTGATTGAAAGGCGAGAAGAAAACTCATCATTGCACACAATGGTTGTAACAAATTGCGAACAGGCTTCAGCTATTACAAAGTCCACACAAGGTAGTGGTCCGTATGCATATACATGCACGTTTGGATACCTGCCAAAAAGCTGTGAGAGAACAAAGTTAAACTATGGAGAACCATGGACACCATACACTCCAAACAAAAGTAACACTCATTAGGAATTATAGGCAGGGAATTAAAGAAAGTCAAAAACAAAAATACAAATCAACAATCATACGATGACCTGGTCCAGACAAAGTTCACTGAGAAGTTTTGGCCTTTTGGGCAATACGTCAGATGCGCACACGCGAACACACACACACAGATGACTCTGCTGTTCCCGTAGTTCAGACAAGCTTAATGGGATAGTCATAGATGTTCTTTATGTTGTCGTATATAATGCCTATACTACAGTAACCCACTTTTATAGCGGTGCAGAAGGATGTTGGTCAATAGGGAAATCAGAAAAAGGTAATGTCAGGCTGCAGAAAGAATATGATTAATAACAACATGCTATGCTAAAGATAAAAGGTGAAGATTCAGCCAGCATTACCATCATTCCAAGAACTGTAGCAACAGAACCCCCTAAAGAATGCCCAACAACTCGAATTTTATATCCATGGCATTCACTGCCTTCCCCCACCAGTGCAGGAAGAAATCCAACTGTTAGGGATGACGAATTATCTCCTGTGCAGTCGTTGAGTTGCATGAAAAGCTCCCTGGCGGACTCTAGAATTCCACCATGTCCATAATGCGGAAAGGTAGAAATAACTCTCTCCCTTGTAGTTGCAGGTAACTGTTCACATTTTACTAGTCCATCCAAATCCTCCATAGTAAATGCACATTCTCTGCATAATCCATCGGTTATGAGATCTTCTGGTGTTTCAGTTCCACGAACTCCAATAACAACTGTCTTTTTGTCATGGAGGACCACGACAAAGTAAGCAGCTTCCCTCTTGCTCTGGCAAACACGGCCCCGTAGAAGTGCTGCAGCTGGTATGTGAACAAATCGAAGGAAAGCGGCAGCATGCCCTCGCCACCAGTTGTCACCATCAAGTGCAGGGCGCCTTCTGCGCGACCATGGAGTTAAAACACCTTGTCTGTAAACCCATGCACATGGAAACAAAATAGGGTTTCTCCCAACATCAAGGAGAGGTCCCGTGTAACATGCTTCAGCAAAGGGATGAAGGATAGCAGCTTCTTGCATAAGGTTCAGTGGCGCTTCCGTAAGGTCAGTTTGCAAATGAGGCAAATTTTCATTTTTCTGTAATAGTGCAAGCCCTGCTAAAAGTTCCAAATGTCCTGTCCCAGAAGCACGATATGCAACCAAATCACCCAGAAGTCTTGCCACAGAGTAAACCTCATCCTCTTCCAATACGGTTAGATACTTTGCACGCCCTAGGCAGCATAAAGCTTCTCGAATTCCATGATCGAACACTTCCCTGTAATGAGCTTTCCATGCCATGTCATGTGTTGCATAGAACGACCTCCACCTTAATATATCAGAACCCGTGAAGCATTGGACAACGACCACAACCCAGGAAAGAATAAGAAACAAAGCAATTAATGCTCGTTTCGAGACATGATCAGCTTCATCCTGTCCAAAGAAACAGGAAGTGGCTCTTCTTTCATTTGAAATATCTCTGACAATGACAAGCATGAGATAAATTGCCCCAACCAATTGCATTGCACCCACTGCCATGCCGAATCTAGTCCACCACAACCAGCGTTTATACCTCACCTCAAAATTCTGATAAATGGTGAAATCAAGTCCACTTGTTCAGATTGATCGTGTCTCAAATAATCCCGTATTGTAACCATACC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0269100.1 | 4 | 24431873 | T | G |
| Osa04LNT0269100.1 | 4 | 24433489 | C | T |
| Osa04LNT0269100.1 | 4 | 24433596 | G | T |
| Osa04LNT0269100.1 | 4 | 24434084 | T | C |
| Osa04LNT0269100.1 | 4 | 24434324 | T | C |
| Osa04LNT0269100.1 | 4 | 24436153 | T | C |
| Osa04LNT0269100.1 | 4 | 24438075 | T | C |
| Osa04LNT0269100.1 | 4 | 24438886 | T | A |
| Osa04LNT0269100.1 | 4 | 24438698 | G | A |
| Osa04LNT0269100.1 | 4 | 24435084 | A | T |
| Osa04LNT0269100.1 | 4 | 24438286 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0269100.1 | osa-miR5796 | Cleavage | 5.0 | 20.682 | 1 | 21 |
| Osa04LNT0269100.1 | osa-miR166b-5p | Cleavage | 5.0 | 13.405 | 1 | 21 |
| Osa04LNT0269100.1 | osa-miR160e-3p | Cleavage | 5.0 | 15.817 | 1 | 21 |
| Osa04LNT0269100.1 | osa-miR166i-5p | Translation | 4.0 | 16.721 | 1 | 21 |
| Osa04LNT0269100.1 | osa-miR1868 | Translation | 5.0 | 20.682 | 1 | 24 |
| Osa04LNT0269100.1 | osa-miR5494 | Translation | 5.0 | 11.34 | 1 | 21 |
| Osa04LNT0269100.1 | osa-miR5498 | Cleavage | 4.0 | 12.986 | 1 | 21 |
| Osa04LNT0269100.1 | osa-miR5501 | Cleavage | 5.0 | 15.223 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0269100.1 | 4 | orl1 | Morphological trait | Culm/leaf | S10628 | C377 |
| Osa04LNT0269100.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0269100.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0269100.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Osa04LNT0269100.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0269100.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0269100.1 | 4 | nan | Morphological trait | Culm/leaf | RM3337 | RM3785 |
| Osa04LNT0269100.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)