© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0269300.1
ACAAAATACATCATCTGCATATAACTCTCAAGGTTTGCCAAGTCAGATACACCTGGTGGAGGAATAACGAGCAAGAATATTAAAGCGATAATTTTCATTCCTGTTTCTGTCCATAACAGGTTTTTAACCGTCTCCCCGGCACATCTAGCACCGGAACTATACACTTGTGACGGCAATGCACAACCAGTATAGCTCGTACAGTCCTTCCCATGTATACAAGATTCGACACCAACACAACCTGATTCTTCACCCACCCAATGCTGAAATTATCCCAGTTTCCACCATGAGAAATTGACAATACATGCCAGGTGACAGAACAATGATCTAGTCGCTACCACGTAATAAAATTTGGTCTGCATCCAGATCTTCCTAAAACTTCCCAGCTAGAGAGAGCCGATAGAAACTGAGGGTGGCACGGCCATCTTAAAAAGGGAGCCAGCCACCGACCCTTGCCAGCAAGGGCAAGCAGGATGAGAGCTGGCTCACTACGGTGCAGCGCCCAAAAGGCTCTGGCGATTGCCCTGGTTTCCCCATGCTCTCTCCTTCCACAGGAGCTCAACCTGCTCAAAGCTGAGGCCTTTAGTCTCCGGCACGTAGAGAGCCACGAAGATGAAGGCCAGCACCGCTATTCCGGCGATGATCAGGAAGGTCAGGCCGGTCCCAACCAACCCGACGATCGAGAGGAATGTTTGTGCCACAATCAGGTTAGATACCCAGTTGACAGTGGCTGACATGCCACCACACATTCCACGGTATGCCTCGGGGTAGATCTCGGAGTTCACTGCCCATGGAACTGGCCCCATGCCTGGGGAGAAGAAGGCGATGTATAGAGCGAGTCCCGCCACCGCGAACCATCCCAGTGCACCTTGGCAGGCACCATTGAGTGCATTCGAACAGATATCTGATGATGACTGCAGTATGAAGGCCATTGCTAGGATGGCGAGGGAGACCACCACACCAGCCAAGCTTGTAAGGGCCAGGCGACGCCGGCCACAGCGGTCAATCAGGTAGATTCCAACAATGGTCCCAGCGGCATTCATACCAGCGACTATGAGGGAAAGGAGCAATGCCAACTTGTTGGAGGTAAACCCAGCCATCTGGACAATTGTTGGGCTGTAGTACATGACAGTGTTGATGCCAGTAAATTGCTGGAACGCCTGAAGACCAGCTCCAGCAAAAAATGCTAGCCTTAGTTCCTTTGACTTGAAAATGTCCAAATAGCTCCCAGTACCATCAGACTGAAATTCATGCATTGAAGAAGAAGCAAGAAGCTCTACCTCTTCCTCTAGACGGTCAGAGTCATAAATCTTCTCTAGGACAGAAATAGCTTTTGCTTTCTCATCCTTCCAGAAAAGCCAACGGGGAGATTCTGGCAAAAAAAGCATCAGAACAAACTGTAGAATTGCAGGCACAGCAGCAACTCCGAGCATCCAGCGCCATGTTCCAGGAACCAAACAACACCTTGTTGGTGATTCATCCATTGCTGCTGGCAAGGAAGCTGACTCTTGTTCATTGCTAATTAAGTGTTACACAGTTAACTAGCACCAACAGGAATGTTAATACCATAAAAGGTAAATATATGAAAAGGAGAAAAAGGTAGTATAAACATGGCATTGATGCTGAAATCCTTTCTCAAGGGAGTTCATCTTGAATAACATAACATGTGCAGCTTTTCCATGGTTCTTGTGCAAGAGTACCGACCCCAAGCTTGTTATTTTTTCATTAAAGATATGATGCGAGCTCATATATATACTTAGTTGCAGTTAACAGTTAAGTTCCCCATGGCAGTGCAAGACCTGGTTTGTGGAAGCTCAATAAAAAAATTTCAACTGCAATGTTTTCAGCTTGAACTTGTTCCGTTTATAGTTGAATGTTAAAAGAACTTAAACTGAAAACTGCTAATGTGTAGGAATAATGGAATAAAATATGCTAATTAAATGGAGGTTGAATGTCTACCTCAGTAAAGCCAAGATTGATGAGGTAGGAGAAGAATTGACCACCAGTAATCATGAGTACATTAGTTGACACCAAACCTCCCCTAATTTCCGAAGGAGCAGCTTCAGCAATGTAAACTGGCGCTGTGACTGATGCTATACCCACACCCAAGCCAACAAGAAGCCTTCCAAGAATCAGAATGTAAGGACCACCAGCAGCACACATAACAAGTGAGCCAAGTGCAAACAGCATGTCAGCCACAAGAGTAGACTTCCTACGGCCGTATGTATCATTGATCCAGCCGCCGCCAGCTGCTCCAATGATGGCTCCTACCAATGCCATGCTAACGATTGTCTCCTGTAAGAAATAATTGTCTCTGACTGCTGGAAAGTCATCCCGAATATACAAAAGGGCTCCAGATATGACACCTGTGTCGTAGCCAAAGAGGAACCCGCCGATTCCTGCGGCGCCCGTGAGCGCGAGCACGTAGCGGTTGCTGAAGAAATTCATGTGCTTCTTCCCCCCTACGTCGTCCAGGAGCCCGGAGCTCCCGGGCATGGACAAATCGATCGTCATGCCCTCCGCTCCCACCAAATCTGACCGAACCCCCCCCCCCCCCCCCCAAACTCCTCCCAAAATCCAAACTTCAGCAAACAAGCACCAAAAAACAACGACCCCAAAATCGCTCCACAAAAAAAATCCAATCTTTGCCCAGATGCAAGTAAAGCCTGCTCTACAAAATCCAACCTTTCGGCCGCCCCCGAGGTCACAGGCTCGGGAACCAACCAAACCGGGGAGAAGAACGGAAGACGCGCGCAGAAATTTCTAGGGACAGAGAGAGATTTCAGGAGCCGCGGTCCCGGACCAAGGTAGAAAGGGAGAGATTCCAGGGGACGGGGCGACGAGAGACCAGCATTCGGGGAAGAGGCAGGGGCAGCGGCAGCGAGCCAGCGAGGCGCGGCTTAAATAGGAAAGCTGCGCTCGCACGGCTGGCGGGCTGGGTGGTGGTTGGGCAAATGATCGGAGGAGAGAGCTGGGGGAGAAGAAGGTGAGCTTGCAGGTTTTGAAGGAGAAATTTTGTTGGGTTCAGATGATCAGATCAGCATCGTCGCATCATCGATTGGCGATGAAGCCGATACGCTTCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0269300.1 | 4 | 24567820 | A | G |
| Osa04LNT0269300.1 | 4 | 24567967 | A | G |
| Osa04LNT0269300.1 | 4 | 24568389 | G | T |
| Osa04LNT0269300.1 | 4 | 24571304 | A | C |
| Osa04LNT0269300.1 | 4 | 24570441 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0269300.1 | osa-miR5525 | Cleavage | 4.5 | 5.34 | 1 | 22 |
| Osa04LNT0269300.1 | osa-miR5791 | Cleavage | 4.0 | 22.027 | 1 | 21 |
| Osa04LNT0269300.1 | osa-miR5807 | Translation | 5.0 | 9.125 | 1 | 24 |
| Osa04LNT0269300.1 | osa-miR156c-3p | Translation | 5.0 | 13.662 | 1 | 22 |
| Osa04LNT0269300.1 | osa-miR156g-3p | Translation | 5.0 | 13.662 | 1 | 22 |
| Osa04LNT0269300.1 | osa-miR408-3p | Cleavage | 5.0 | 22.789 | 1 | 21 |
| Osa04LNT0269300.1 | osa-miR1857-5p | Cleavage | 4.0 | 15.755 | 1 | 21 |
| Osa04LNT0269300.1 | osa-miR1857-5p | Translation | 5.0 | 11.194 | 1 | 21 |
| Osa04LNT0269300.1 | osa-miR2055 | Cleavage | 4.5 | 15.785 | 1 | 21 |
| Osa04LNT0269300.1 | osa-miR2102-3p | Cleavage | 4.5 | 21.816 | 1 | 22 |
| Osa04LNT0269300.1 | osa-miR2872 | Cleavage | 5.0 | 12.359 | 1 | 21 |
| Osa04LNT0269300.1 | osa-miR3979-5p | Cleavage | 3.5 | 19.938 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0269300.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Osa04LNT0269300.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0269300.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0269300.1 | 4 | nan | Morphological trait | Culm/leaf | RM3337 | RM3785 |
| Osa04LNT0269300.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0269300.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0269300.1 | 4 | orl1 | Morphological trait | Culm/leaf | S10628 | C377 |
| Osa04LNT0269300.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)