>Osa01LNT0024800.2

GGGTAGACTGTCCCGAATAATGCATTTCCATGTGATCGACGCAACTACAATAATTCCATCATTCCACGTCCACGACGCACTCATGCGCCGAGGAAAACTGTCGGTCGGAGCGCCATCAGCAATCCAGTCATTATGTTTCAACAAGGAAGGCATAATTTAGCTCACACTTCAGAAAAAAAGAAAGAAGAAAGGCACAATTAGCTCACTGGTCTGGTCATGTCCATTCTACTATGATTGCTCTCCTAGACTCCATCCATTGCATTTTACAAAACTGATGAGATAATACACAACATATGTCAGGTCAGGTTAGCGGCTCACCCTAAATAAAGGCAGGCAAGTTGGCATGTATGTAACCTAATATCGCTGGCATTAGCCAGCTTGGTGCTCCACCTGAGTACCTGATAGAAAGAACTCTAGGGTACCAAACAGCTGAAGTTCTCTTTTTGTGTGGTTAGCAGCTCCTAGATCATTCAGTCTGATGGTGAAAGCATCTTGGATCGATCCGCAAACCATACTTGCAACACCAACAATCTGCAGACACCTCAGCGGAATTCATCATGAAAATAGTCTTCGTCGTCGCTAAGGAAGACGCTGCCATAAAATGCATACGGGTTCTCAATCATCTCATCCAAAGTTAGTCTTCCATCATGATCTTTGTCAGCCTCTGAAATAGCATGGGCAGCTTGTTGTCTAGCATAATAACGTTCTGAAAGATGGAGCTTATCAAGAACAGGTTCTAGTTCGTGCTCTGAAATAAACCCATCACTGTCTTTGTCAAGTTTGGAAAACCGCTCCTTAGCTACTGTATTGTTCCCAATATGGGAAATATCTGCGTTCTCGTAATCATAACCATGTATATGGTCATGTAGCCCATGAAAATATTCTTCAAAGTTTAGCTTTCCATCACCATCCTTGTCTCTCTGTCTGGGTATGGCACGATATGTAAGGAATTTAAAATGTCAGCTCAAGGAACTGCGGTGTTATCCTTATTTCTTGTTTGCAGAGCAAATTGATAATTTGGGGATTCTCTGAATCGCTGGGATTAAGGAAGTCATTAAACTCGGTTTTATTAAGGAAACCATGGCCATCTGCATCCGAAGCATTGAAATGCTCCTCTTTCCACCATGGGAACCCCAGCGAATTAACCTCTCCACTCGATTCGTTGTGCTGAGCCCGGAAGTCCCCGTAGGAGACAACCCCGTCGCCATTCTTGTCGTAGAGCTCCATCTCCCGAGCGGAGCGGTGGAGCTGGTCGGCTCTGGACTGCTCGAGGTTCCACCTGGTGAGCTCGTCGAGGGAGGCGAAGCCGTCGCGCGGGGCGAGGTCGATCTTGGGGAAGAGCGCGCGGATGCGGTCGCCGAGGTTGAACCGCTCGTCGTCGTTGATGAAGTCCTCGTCCTCCCTGAGGAACTCCTCCCATTCCCTCATGTGCTCGTCCGCCTCCCCTCCGCCGCCGTCGCCGTGCAGGATGCGGTAGTGCTCGCGCTCCCACTCCTTGTCCTCCAGCCGCCGCTCCAGCTCCGCGATCTCCGGGTCGAAGGGCGCCGCGTGGTGGTGGTTCTGCTGCTTCTGCGGAGCCCCGTTTCCTCCGGTGGGTGCCCCCGCGCCGGCCCCGGAGAGGGAGGGGTTCCTGGGGTGGAGCTTGAGGCGGCGGTGGAGGCTGCGGCCCCGGTGCGGGATGCTGGGTGAGTAGGAGGTGAGGAGGAGCAGGATGACGAGCGCGAAGGTGACGTAGAGGAGGAGGGCGGAGAATGGGGACCTCCGCCCCGCCGTGGCCGACGGCGGCGGCGGCATCGCCGGCGAGATGGGGGTGGAGATCGGAAGTGGGGTCGGGGGCTGAGAGATGTGGGGTTGCGGGTTGTGTGGGTC

Explanation	CPC Score
noncoding (weak)	-0.226346

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0024800.2	1	22024323	C	T
Osa01LNT0024800.2	1	22021979	G	T
Osa01LNT0024800.2	1	22022009	T	C
Osa01LNT0024800.2	1	22022639	C	G
Osa01LNT0024800.2	1	22022899	T	A
Osa01LNT0024800.2	1	22023559	C	A
Osa01LNT0024800.2	1	22024685	C	T
Osa01LNT0024800.2	1	22024877	G	A
Osa01LNT0024800.2	1	22025588	A	G
Osa01LNT0024800.2	1	22025906	G	T
Osa01LNT0024800.2	1	22026846	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0024800.2	osa-miR5544	Translation	4.5	15.729	1	22
Osa01LNT0024800.2	osa-miR319a-3p	Translation	4.0	18.553	1	21
Osa01LNT0024800.2	osa-miR169q	Cleavage	5.0	18.594	1	21
Osa01LNT0024800.2	osa-miR812a	Cleavage	5.0	11.641	1	22
Osa01LNT0024800.2	osa-miR812b	Cleavage	5.0	11.641	1	22
Osa01LNT0024800.2	osa-miR812c	Cleavage	5.0	11.641	1	22
Osa01LNT0024800.2	osa-miR812d	Cleavage	5.0	11.641	1	22
Osa01LNT0024800.2	osa-miR812e	Cleavage	5.0	11.641	1	22
Osa01LNT0024800.2	osa-miR810b.2	Cleavage	5.0	13.228	1	21
Osa01LNT0024800.2	osa-miR1857-5p	Cleavage	5.0	24.053	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0024800.2	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0024800.2	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0024800.2	1	nan	Resistance or Tolerance	Drought tolerance	RM129	RM5
Osa01LNT0024800.2	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0024800.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0024800.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0024800.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0024800.2	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0024800.2	1	qNVB-1-1	Morphological trait	Culm/leaf	R2159	C178

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus