>Osa04LNT0271000.1

GAAATCAGCTCTAAGGATTTGTCAGTGAGGTTGCCATTTTGAGATAGGTTAAGCAGCGTCAGAGCTTTGAGGTCTTTGATATTCTTCACTCCAGCATCTGTAATTAACCCACCGCAGACCTCAAGGGACTGTAGATTCTTGAAATATTTCAAGCAGTTTGTCCCAGCATCAGTTATACGAGCTCCAAATAGATCAAGGTGTGTCAACCCAGTGAGACCTGCATTAAACAAATGTCACTTCAAGGCAAAATACAACCAAAGGACTACACAACGATACAGAACTGGAGAATTCAGACGATAACCTTGTAGCCAAATTCTTACTCCTACTACAATGCACAACAATCACCATTTGATTAAAGCGAAACATCAAACCTTGAGAGGAAAGGAACACCATCCTAAACAGACATAAAAAAGACCAACACTCTACATGCCCCAAAAAATAACGTAGCACCCAATCATGCCATATCCAATTAAATTGCTAAAATGGGTAAGATACCATGTCTAATGCATAACAGGAAACCCAATCATGCACGCCAGTATTAAACAATGTAATTTTACCAAAAATGAGGACATACATGTAAGAGCTGCCAAACCATTATCTGTGATTTGGCGATTATCAAGATTAAGGGATCTGAGTGAATTCAGGCCAGAAATTTTCTTCAAGCCAATGTCCGTAACCAATGTAAAAGAGAGATTGATGCTCTGCAAATTCC

Explanation	CPC Score
noncoding	-1.22745

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0271000.1	4	25128205	G	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0271000.1	osa-miR159d	Cleavage	5.0	13.875	1	21
Osa04LNT0271000.1	osa-miR159e	Cleavage	5.0	13.875	1	21
Osa04LNT0271000.1	osa-miR2864.2	Cleavage	3.5	8.841	1	21
Osa04LNT0271000.1	osa-miR5500	Cleavage	5.0	13.515	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0271000.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0271000.1	4	qChla4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0271000.1	4	qChlab4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0271000.1	4	qPH1-4-1	Morphological trait	Dwarf	RM241	C2807
Osa04LNT0271000.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0271000.1	4	nan	Morphological trait	Culm/leaf	RM3785	RM1388
Osa04LNT0271000.1	4	nan	Morphological trait	Culm/leaf	RM3785	RM1388
Osa04LNT0271000.1	4	nan	Morphological trait	Culm/leaf	RM3785	RM1388

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus