© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0271600.1
GAGAATTCACACCTAGCAATTCCAACGGAAATCATACAGCAAATGAAAATGGGGCAGACACTAGGTCTCTCCATGAACCTACACTATCCTTTTTCTTTGTACAGTGTAAGCACTAAGTGGTACAAAAGGAAAACACTCATTAACACTCACCATGCTGACAAAAAGAAGAGGTTGAAAAAAAAAAGGAATACATAATCACACAAAGAGAAAAAGAAGGGCAGGAGCTCGATACACAAGGGGCTTTGTTTATACTATACACATGCACAAACAAATGAAACCCAAAAATGCACCCCTGCCAAACAGGTATTCATACAGAACACAAATAATAACAGGGCGTTGTGTTGCACCTCAGGTCATTGGTTAGCATCAATCGGAGCGCCAGACCTTGCTTGTGAAATCCGGTTTGCGTAGATAGTTACAAGGCGCAGCTGCGTGCTGTTAAGCCCTTCCAAATACGGGACGAATGCCTTCCCAAGCATGATGTAGATATCCACCAAGCAGAATACAACAGTCTTTCGAACATCAGGGCTTTGGTTACTAAAAGCATCAAACAGTGCTGGCAAAAATGTGGGCAACTGATTCATCAATTCCTCCTCGGAAAGCCGTCCAACAAGCTTTGTCAAGGAGTTGATACACACAACAAGTGTCTTTTCATCATCACTGACCAATAGAGGCACCACAACAGCAAGACATCTGAAAGGATCATATTTTGCTAACAGAACATTTAAGCACTGGTTTGCCTCATTTGAAATCTTTGCCACCATGTCTTTGGTAACATGCAGAAGTTTCTCCAGAACAATTTCAATAGATTCTTCCATAGCACCACTCTGATTGTTGAGCATCTCGGCAACTAAAGACAGAGCAATCTCCCTAGTAGATGAATCAGAATCATCCAGCACCTCAAGCACAGCCGTTAAGATTTGATTGAAATACTTTGCCCAAATGGAGATGTCATTATCAACAGAAGCTTTAACCAACTGCTGTAATGCTTCCCGCTTTTCCAAACTTGAAACTTCGGTACCGTTGCTTATCTGATGAAGAAGTTGTGGTATGCTCAGTTCGTTGTCAGCATGTAGGGTAGTCTTTATAGAACTAAGTTTCACAGCAATATCTCCCTCTTGAACATTTTCTTCAGCAGTAGAACCAACAGCATTGTGCCCATCAGAAGCAGCGCGATGGCTTAAGTCTAAGCGAGGAGTACTGATAGCAGTTTCATCATCCAAAGGCGCATCAGTTTTTTCAGGATAGTTTGGCCAAGAACGAGCAGTTTCCACTAGTGAGCTAGTATTATTCTTTGATTCTCTACTTCTAGTTAAAAGAACTTCACTTCCAGTGTCCAGTTCTATGCTTTGACTAGTATGATCTATGCTCATATCAGAAGTAGTTCTCGCCATAGGCGCATTACGCGGTGTTGACTCTTGCACTGAATTCATCCATTTCCCACCTTCAGCATCAAGGGAACTAGAGGAATACCGCCCAAATGGATAGCTTTTCTTTGATGCAAGCGCGTAACCATCTTCGGAAGAAGTTCCATAATCTGCTTGATCATAAGATTTGGGACGGGGACGATCTTTCTTGCTCTGTAAGTAGTTCACTAAATCAACTTCAATGCGAGGTGTGTATTGCTTCAGTGCACGCCTCAAGAGGTTTTGCTCCTCAACAGATAAGTTTAGAATAAAATTTAGCACTGCTGTTGAATCAAAATGAGAATAAACAGATATGATACCAGAAATGGATGCCTCCTTCAGTTTTGCATTTTTTTCATGAACTAAAGGTGCCAATTTTGAAAGCCACAGTTTAAGGAACCCACTGTTACTATAACCTTCAGAATCTACAGTGTACTTGCTGAACGATTTATTTGCGAACTCAAGAACAGCCAACTTTGCCTTTGGGGACCTCTGTTCATCTAGTGAGCGCACTAGGGCAGGTAGCAACATATCAATTGCATATGTTCTCCCAACAACATCCAAGGTTGATGAGCATGGTTTTTTTACCAATTCTTTTGGATCAATAAGCCGGGAAAAAACATATGGCAAAATTCTTTCAACATAACTCTCAAATGGCTTCTTGCAAGCTGGAATAAGTTCTGCAAGAGTAGAAAAGGCTGCTTGTGCAACCTTATGATGAGGGTCATCCAAATGACGAAAAAACAGCTTCATGACCTTTTCAAAATTCTGTGTAATTTCCTGAATACCTCTCTGGCCTTGTTGCAGAAGATTCCGAATAAATTCAAAAGCTGAGACTCTCACTACCCAATCCGAACTAGGGCTGAGACCCTCAGAAAGAGCATCACTTAGTGAAGCCAGTGCATCCGTATAACCAGACACGTCACCTGACTGTACTTGGCTATCGTCAAAGCTGTGCCTGATGCTGGCAGAAGCCCTTGACATTACTTGCTTCCTTAGAAGAGGTCTCTGGAAATTTGGAACATGATTATTATGTGAATCTCTGTGGATGGCATCTCTGTAGGGCATGTCAACATAGTTTTGAGTTTGGGGGAATCTCCTAGTTGACCGGATATCACTACCCTCATCCATGCGGCCTCCTTCTTGTGGCCTCTCCAAAGACCTTCTTGGAAAAGGCAGTGATAAGCTTGTCATGGACTCAGATGATATATTACCCAAGTACGGTGATCTTGATCGCTCTCTGGTGCCCAACTGGGTTGTCATTGACTCCAATAAGCGGGAGCCTCCATTTCGTGCACTAGCATTTATGGTGCTAGGAACAGATGAGTCGAGCAGTGCTGAATTCTGTAAGGACAGATGATTTGAAGCTGTTGCTGCAAGCGGAACAGGAGGATCACGAGACGATGGAGGATCAACCCCAAGATCCAAGCTGGTTGAGCGGGTAGCTGAGATATTTTGCCTATCTGATATGCTTACACCTTTCAGCAAACTTTCAATGGCAGAAACCTTTTCTTTGCTTGAGTTAAGCACACTCTCTAGGCTTCTTTCAGAACTTCTCCCAACAGTCTTTGACTGTGACAAACGAAGAGTATTTGATGAAAAGGATGAATCTGAAGAAATAGCAGCAGTTTTGTCCATAGCAACAATAGCTGAAGTGCCATATCCAAGTGCACTTGTACCACTTGCATGTGATAAAGAACGAGAAGGCTGCACAACCCTCTCACGAAGAGAGGGTGAAGCATACCGCTTGTGCACACCCCCATCTTCATCGTTTATAGTCCTCTGTATAGCAGGATCAAATGACATAAAAAGCCGACGTGAACGCTCAGGCCATGTCTTTGCAAACAGTCTATAACAACTTCTAGCAGTTGCACGGACCTCACTCATCGCATCTGCTACACAGCACTTTATTAGATCTTCGTATAAATCAGCTGAACGTTGTATCTCCGGGGCATCAGCCCAATACTCCAGTATTAAAAGAGCGTACTCGCAGCACCTAGCACGGAGAACTGCACTTCGGTCATTCTTTGCTGTGTCAGCTATGCGAGGAAGAATTCGTGAAATCTTGCAGTTCCGTAGAATGGTTTTTATGCATGTATCGGCTGATTCAGCTATGACAAGCACTGTTATGACAACAAGCTTAAAAAGCATCGGAATAAATAGTTCAGCACATGGCTCAAAATCACCAAGGAGTTCTTTGGATAGTACATTGAGTAGATGGCATGCCTGTTTTACAATGCTAGACCGTCGATCAGACAGCTGAGTTGATAGAGGTGGAACCAACTGCTTCAAGAGCATAAGAAAAGATGGATAATCAATAGCACCTCCATACACCAAAGCTTCAATCCTTTGCATGGCAGCAATACGCACGGACCAGTCCTTTTCTGGAACAAGGGTAGCTGCAATCTTCTCAAACTCCCGAAGTAATTCTTTCTCTGAGTGAACTCTTACTGGTTCCACTGGTTTTTCTGTTATATCCGTGTCCCCTCCGAATAATGTACTTTCCCGTGGTGTGCTTTTTGTCCTTGGACTGCCTCTTTTCGGATTAACACTAACAGATCTAGATTCGACAGCCTTATATTGCATGATATTACCATCAGATGTGGGAACCTTTGGTTCTATTCTTTCCAATCTTGAATTTATCTCCCTTAGCATGTACGGAGGTAAGTTATGGCGCTGCAACTCTTCATGGAACTGAGATCCCATATGTGTGTACATCTCCTCAATGCAATAGATAGCAGCATCTCGAACACTTTGATTTGAATCATTCATCAATTGCAAGACAGGTGAAAGAAGAACTCGTTGCAATGGGAGCTCGGTTGAAGCAAAAAGCCCAACCGCGGTTGCCACTGTACGTACAAACTCTTCCCGGACCCTCCAACTCTTGTGAGTCCATGCATAACTTCCAGCTCTTTCAACTATGATTGTCGGCGAAGAAACCTCCATGAGGGTGATGAGGAGCTGCCGGGCGGCCTCGCGGACGGGCTGCTTGCCGTCCCCGAGGCGCTCGACGGCGGCCGGGACGAGCGCGTTCAGGTGGATCTTAAAGTGGTCCCCGGCGACGACGGCGGCGGCGGAGAGCGCCTGCAGGCCGCCCTGCGCGACCCGGAAGTTGGCGTCCCGTATCAGATCCATGCAGGTGTCCACCAGCGCCGTCACCTCCCCCGCCGTCAGCCCGCGCTGCCGCGCCGCCGCGTCCAGCGCCTCGTGCAGCCGCTCCACCCCGGCCAGCCGCTCCTTCGTGTCCTTGGCGCGCGCCGCCTCCAGCGCCGCCTCCATTTCCCCCCCGCCCCCACCCACTACACCCCGAGCGACCAAACCTAGGGTTTCGAGCCCGGAGGCGAGCGGCGAGGCGAGTCGAGGAGGGGGAGGGGAGGGGAGTGGCCGGATCTGGAGGAAGGAGAAGGGGAGTGTAAGCGCAGCGAGAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0271600.1 | 4 | 25350739 | C | G |
| Osa04LNT0271600.1 | 4 | 25352303 | A | G |
| Osa04LNT0271600.1 | 4 | 25354465 | T | C |
| Osa04LNT0271600.1 | 4 | 25356002 | G | A |
| Osa04LNT0271600.1 | 4 | 25356568 | C | T |
| Osa04LNT0271600.1 | 4 | 25357707 | G | A |
| Osa04LNT0271600.1 | 4 | 25358313 | G | C |
| Osa04LNT0271600.1 | 4 | 25359318 | G | A |
| Osa04LNT0271600.1 | 4 | 25360158 | C | A |
| Osa04LNT0271600.1 | 4 | 25352236 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0271600.1 | osa-miR5539a | Translation | 4.5 | 14.406 | 1 | 22 |
| Osa04LNT0271600.1 | osa-miR5807 | Cleavage | 5.0 | 17.989 | 1 | 24 |
| Osa04LNT0271600.1 | osa-miR5809 | Cleavage | 4.5 | 14.582 | 1 | 20 |
| Osa04LNT0271600.1 | osa-miR5820 | Translation | 3.5 | 23.112 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR6255 | Cleavage | 4.5 | 15.06 | 1 | 22 |
| Osa04LNT0271600.1 | osa-miR5539b | Translation | 4.5 | 14.406 | 1 | 22 |
| Osa04LNT0271600.1 | osa-miR160f-5p | Translation | 4.5 | 23.251 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR413 | Cleavage | 5.0 | 14.497 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR417 | Cleavage | 3.5 | 11.393 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR535-5p | Translation | 5.0 | 23.928 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR1875 | Translation | 4.5 | 19.415 | 1 | 24 |
| Osa04LNT0271600.1 | osa-miR1877 | Cleavage | 5.0 | 17.127 | 1 | 24 |
| Osa04LNT0271600.1 | osa-miR2093-5p | Cleavage | 5.0 | 23.805 | 1 | 20 |
| Osa04LNT0271600.1 | osa-miR2101-3p | Cleavage | 5.0 | 12.865 | 1 | 22 |
| Osa04LNT0271600.1 | osa-miR2874 | Cleavage | 5.0 | 11.272 | 1 | 24 |
| Osa04LNT0271600.1 | osa-miR2876-5p | Translation | 5.0 | 19.104 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR2876-5p | Translation | 4.5 | 19.294 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR5144-5p | Translation | 4.5 | 16.899 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR5157a-3p | Cleavage | 4.5 | 13.278 | 1 | 24 |
| Osa04LNT0271600.1 | osa-miR5157b-3p | Cleavage | 4.5 | 13.278 | 1 | 24 |
| Osa04LNT0271600.1 | osa-miR5338 | Translation | 3.5 | 14.059 | 1 | 21 |
| Osa04LNT0271600.1 | osa-miR5505 | Cleavage | 4.0 | 20.502 | 1 | 22 |
| Osa04LNT0271600.1 | osa-miR160c-3p | Cleavage | 5.0 | 23.968 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0271600.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0271600.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0271600.1 | 4 | nan | Morphological trait | Culm/leaf | RM3785 | RM1388 |
| Osa04LNT0271600.1 | 4 | nan | Morphological trait | Culm/leaf | RM3785 | RM1388 |
| Osa04LNT0271600.1 | 4 | nan | Morphological trait | Culm/leaf | RM3785 | RM1388 |
| Osa04LNT0271600.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0271600.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0271600.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0271600.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)