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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0024900.1

GCAGGTATTCTGTCATCAATCAGTTTTTTATTCCTGAAAAACAAGTATTACTTCTGTAACAAAATTGGGAGAATTGCCATGGTTTCAGTTCATTGATAGACAATGCTGCATCAATGGCAGCTGAACAAACATTTTGTTTCCTATGCATCAATGGCAGTTTTCACTTGCTCTGCTCCTTTGCCTTCAGCGCCTCGATTACAGCAGAGAAGTCCTGGTCTGCAAGCCCAAGCGATTTCGCGACCTTGTACAGCTCGTTTGCAGCTGCGACTGTAGGAATAGACTGGGACACCGATTCTGCCAGGGCCAATGCGAGCCTCAAATCCTTCTGCTGATGCTTCAGAGGAAAAGCAGTAGGGTATGCAGCTTTAACCATGGAAGGGCCCTTGAGGGAGAACATGGGAGCACTGATAGCACCTTGTGAAATAACCTCGACAAGAGTATTGGGGTCTAGGCCAACTTTTTCGCTCAGGAGCAGTCCTTCTGAAAACGAAACCATCATGCTCCCCATGACCATATTAACAACGAGCTTCATGTCTGCACCTTTGCCAACGTCACCGAGGAAAAATCTTGACTTGCCCATAACATCAAGGAGGGATGCCACTCTATTGTACAAGGACTCATCACCTGCGGTAAGAAAGATGAGCAGCCCATCTTCTGCTGGCTTTTTTGAGCCTGAAACTGGAGCCTACTCAAGGAAAGATGCCCCAGTACTTGTAATGTGCTTGCCAATCAGCTTGGATGTAGCAGCGTCAACCGTCGACACATCCACATACCCTTTCCCTGGGGCCATCCCCTGTGCAGCTCCATTGGCCCCGCATGCAACCTCAACCGCGCTCTCCGGATCAGCAAGCATCGCGAAGGTCACATCGCAAGACGAAGCAACATCGGCCGGTGAAGGCTCGTACTTGGCGCCGAGGCTGAGGAGCGGGTCGCACTTGCTCCTGGTCCTGTTCCACACCGTGACATCGCACCCGGCGTTGATGAGGTTGGAGGCCATGGGTGCGCCCATGATCCCGAGGCCGAGGAACCCCACCTTCCCACTGAACCCTCCTTCCCCGGACGGCGACGACGAGGAGGCGGAGCAGGAGAAGACGAGGCGTGCTCCCCTGCCTCCGCCGCGTAGGCGCAGCGTGGGCGCCGCCGCCGCCGCCCTCGCGCACAGGAGGGAGGCCGCCGCCATCGCCGCCATGGATGCAGGAAGGGGGGAGAGAGAGAGATAAGGAAGGAGGCGCTGCTGCTGCGAGTGCGATGCGGGCG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.301211
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0024900.1 1 22088636 T C
Osa01LNT0024900.1 1 22090163 A G
Osa01LNT0024900.1 1 22090559 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0024900.1 osa-miR164a Cleavage 4.5 16.608 1 21
Osa01LNT0024900.1 osa-miR164b Cleavage 4.5 16.608 1 21
Osa01LNT0024900.1 osa-miR164d Cleavage 4.5 16.608 1 21
Osa01LNT0024900.1 osa-miR164e Cleavage 4.5 16.608 1 21
Osa01LNT0024900.1 osa-miR164f Cleavage 4.5 16.608 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0024900.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0024900.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0024900.1 1 nan Resistance or Tolerance Drought tolerance RM129 RM5
Osa01LNT0024900.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0024900.1 1 qNVB-1-1 Morphological trait Culm/leaf R2159 C178
Osa01LNT0024900.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0024900.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0024900.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0024900.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus