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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0272300.1

CTTCAATCACAGAATTTTATATGTCAATCACACTTTCAGGTTACAGACACATTTCAATAATCACATGGATAGTACATAATGTATGTTCCAACCGGTAAACCTTATTTCCATTGTTTTTTCAGATGGACAAACATGATGTGGCTATAGCTATAGTCCACACAACAACACACACAAGCAATCAAGCACATCCCAGGTCCCGGGACGATGAAATTAGGAGGCTACTTCTGCTTCTCATGTGCCTCCCTTCTCTGCTGGGCAATCGACTCGAATAGGCTCCCATCGAAGCAGCGGCGAACAGCCTCCTTCCTGAGGAATCCTTCCTCATCTTTCGCAAGCACGTAGAGCAATATCCACTCCCCCTTACTCGCGATCCTCCCAAGCAAGTCGAGCGCCACCCTTTGGCCTTCGGTCATCCGCCAGATATCGCCGAACGTGAGCTTGTCCGGCGCCGTGCGGGCGTTCTTGCTGAAGATGCTCTCGAAATTGACCGGCATAAACCTTCCCTCGTTGTCGTACGTCGAGCTATCGCTGCCGTGCTTAGCCCTGTGGATGTTTTTTATGTGTATAGGGAACAGGAGAGATGGTATCCAGCTTGGCAGAGTTGGGTAGCTTAGACCAACGTTTATGGCTATCGCCAAAAAGAACGAAACAATCACGTTGAAGCCCAATTCCCGTAGTCCTGTGTAATTTTTACACCTTTTCATCAAAGGTTTTGTACCCCTCAACAAGTAATGTTCGGACTAATATTGTGAAGGTGAAACGGAGATACCGCCGTGACAACAAAAGAGACGTATGAATACTGTAGAATATGATTCTATCGGGCTGAATGATCTTCCGATATATACAAATATTTTATTCGGCTGAACAATAATAGCCGTTTAATTTTTTTTTCCGCAGCAACAATGGAGCTATATGTTTTGTAGTATGTACCTCCATAAGTTTCCCATGGATAAACGATACCGTCGCCATCCAGGTCGAAGAAAGCCACATGCTGCTGCAGCACACTCATCTGCCGGTGGTCACGCCCCTCGGTTCCTTCAGGATGGTACACGTCCGGAGCAACCAGAGCTCGGGCCAAATAGGGCTTCGGAATCTGCACTTCCAAGTCCGCTCGGACCGGCCGTTCTCTCGTCACCGGCGCCTCCGCCGCCACGGACGACAGCGCATCGGTCGGCGCTGCCTTGCTAGCCGCCTCCTCCGCCATAGCGATCTCGATCAGTAGTCGGTTTAGCAAGATGCGTATATACTGGTGTAACCTGTGTGGAATTCTCGCTTTGCAAAATTGC

Coding Potentia
Explanation CPC Score
noncoding -1.1271
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0272300.1 4 25564722 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0272300.1 osa-miR5837.1 Translation 4.5 14.819 1 21
Osa04LNT0272300.1 osa-miR160c-3p Translation 5.0 21.486 1 21
Osa04LNT0272300.1 osa-miR164a Translation 4.0 24.19 1 21
Osa04LNT0272300.1 osa-miR164b Translation 4.0 24.19 1 21
Osa04LNT0272300.1 osa-miR164d Translation 4.0 24.19 1 21
Osa04LNT0272300.1 osa-miR164e Translation 4.0 24.19 1 21
Osa04LNT0272300.1 osa-miR164f Translation 4.0 24.19 1 21
Osa04LNT0272300.1 osa-miR2055 Cleavage 3.5 18.39 1 21
Osa04LNT0272300.1 osa-miR2878-3p Cleavage 5.0 17.741 1 24
Osa04LNT0272300.1 osa-miR5072 Cleavage 5.0 19.885 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0272300.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0272300.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0272300.1 4 nan Morphological trait Culm/leaf RM3785 RM1388
Osa04LNT0272300.1 4 nan Morphological trait Culm/leaf RM3785 RM1388
Osa04LNT0272300.1 4 nan Morphological trait Culm/leaf RM3785 RM1388
Osa04LNT0272300.1 4 qChla4-1 Morphological trait Shoot/Seedling C2807 RM241
Osa04LNT0272300.1 4 qChlab4-1 Morphological trait Shoot/Seedling C2807 RM241
Osa04LNT0272300.1 4 qPH1-4-1 Morphological trait Dwarf RM241 C2807
Osa04LNT0272300.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus