>Osa04LNT0275100.2

GCTCGTTAAAAGGAAATAAATTACACGTAATCACCGCAATTTTCAATTTCCAAGTTTCTGGTACAATGGCATTTCCCTTCAGCAAATAAGTTCGTTGCTGTGAGGTTCTACCAGACAGAAGATGGGACGATTGAAGCACACATCCAAATAATTGATCGTGTATACCGTACAATTTACAGGGATAGCATATCGAGCTAATGACTACAATTATCGTGGCAGATTCTTTACCACAGTTTTAACAATTAGTGGAACCAAACTGAAGCTGCAAATCAGCAGTTTGTCTGTCATCGCTGCACACTAACCAGTTCTGCTGGGTCTGAACCACCAGACTACCAGAGTGCCATGAGTTAAAGCCGGTAAGAGTATTTATCCACCACGTCTGCTTCTGTCTGATTGGGTTTACATCCCTGTTTTCTTTGCTTAACAAACATGTATTTTCCCCAGTGCAGCAAGGGACGTGCTCAATCACCCAGCATTCTCCGTTCTCAAGTTGTCTGCCTCACTACACTAGAGCTCACAAGTTTTCAGCTCGCGCTGTGACTGATCTATTGACTGGTATTCTTTGGCAGATGCAAGATGATGGAAATTCATTGAAATCATCTCTTCCTGGTCTGATATCATCCGGTTCTCCCATTAGTCCCCTCTGCACTTTCTTTACCTTCTGTGAAAATATATCCCATCCCATCTGTTTCCGTCTCTTAAATAGTAAGTTGAGTTTTTTAGCATTTGGGCGAATGGTTCTCTTGTGGCCCATGTATCGCCTTCGTCCAGCTAAAACCTTGGCCATGTTTCCATTATTGTTTGTAACAAAAACATCACTCCCGTCACATACGATGAAATCAATTGCAGCCAATCTTGAAGAGAACGGAAGGAACGGTTTCAAATCATTCCCAGCAAGCATTTCTTTGGTGTAGTAGTTTGGAAAGAGATCCCTCAGAGGCTGGAGAGTTTCTTCTCCCCCATATATTTCTCCAGAAGCAACATACAGGTACGTGTCATTGCTAAAACCAAGAGCTCGGAGCATCAAACCAATTTCTTGAGGAGTCAGTGGACATTTGCCCCTACTGCGCTCATCCTCAGCGCTCAACTCAGGTAGTGTATCCCATCTTTTCCTAATTTCACCTAACTCCCTCCGTTCTTTATCACCACCACCATAGTAACAACCAGAAAATGCAAGCATGTCAGGCTCAAACCTCAAGTGAACGGCAACGTATCGTGAGCTCATGCTCCTCAGCTTGCGCACCAATTTCTCACCTAGAGTTTGTATGGAATTTGTAAATCTTAATGCATGGAAATTTACTCGGCAGCGTAACTTCTGCAATTCTTCATCAAGCTCGTTAGTGAGCCGATAATCAAACTTTGTTAGCTGCAAAGCCTTCGCATAAGGATAGGCAAAACTTCATCAATGTAAAAATCAGGCATGGATTTCCTAGGCGCACGCATGGTCCATGGGAGTTTATCCATTGACATCATCACCTCATAAGGGATTCTTTTGACAATAGTTACATCCTTTGATAGGTAAGAGATGAACCAGTCCACGTCAAAAATGTCAGAGAAGTCGCTATCATCCTTCCAGAATGAGTGGTGATCTAACTCAGGTACAACAAGTGTGGCATTCAATATTCGGGCGACAACAACAGCATCTGTTATCTGGAAACTGAAGATCGTAATGGTAATACAATGGATAATACAAAGCAACGCAATAAAAAGTTGAAATACAGTTGTACCCCTATGCGCTGCTGATTTAGTCCCCCGCTAGTACCAATCAGCAAGTAACCAGTAGAACTGTTCTCCGGCACAGCAGATCTGAAATTTACGCTCCTCCTGCTGCATCCATAGTACAAGTTGGAATACCTCGATTTCCAAATATTTATGGGCTCGTTATTTCTAACCTGCTTGGATCGCCACCGGCTCCGGATCCGGGACCAGTCGGCGTCCGTAACGATGTGTCCCGTGAAGAGGGACACAAACCCTAGGACGAACAGCGCCGTTCCCAGGAAAACCGGCGACGGCTGCGTCCTCCTCGCTGCCCTCGGCGAGGCGCCGCCACCGTAGTGTGGCTTCGACGGATCAGGCTTCCTCCCCATCCCCCCAACCCCTCTCCCCTAAATCCCGTGCCCCTCGACTGCCTCTGTACGGAGGCCCGCCTTCCTCCGCGCTCCGTCGACGCCGGGGGTGCGAGAGCCACCGCGCCGCGCTAGATCGCGGAGGCACGGGAGCTCGCGGATGGTGCGGCCATGGCGAGAGGACGAGGCGGCCGGT

Explanation	CPC Score
noncoding	-1.07487

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0275100.2	4	27609254	A	G
Osa04LNT0275100.2	4	27610530	T	C
Osa04LNT0275100.2	4	27610565	T	C
Osa04LNT0275100.2	4	27611760	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0275100.2	osa-miR5516b	Cleavage	4.5	13.363	1	21
Osa04LNT0275100.2	osa-miR1429-3p	Translation	5.0	13.625	1	21
Osa04LNT0275100.2	osa-miR1865-3p	Translation	3.5	23.663	1	24
Osa04LNT0275100.2	osa-miR2055	Cleavage	4.5	17.417	1	21
Osa04LNT0275100.2	osa-miR5338	Translation	5.0	18.193	1	21
Osa04LNT0275100.2	osa-miR5494	Cleavage	4.0	8.197	1	21
Osa04LNT0275100.2	osa-miR5516a	Cleavage	4.5	13.363	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0275100.2	4	qCTS4-3	Resistance or Tolerance	Cold tolerance	RM241	RM317
Osa04LNT0275100.2	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0275100.2	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0275100.2	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0275100.2	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus