>Osa04LNT0276000.2

AAGATAAAAACAATAACCTATGCACAGAGACTATCGTACCAGGAGTTCTATACAGCACAACATGAACTACTCCAGTTTATGAGCAACAAAATTGGCGAGTAATGCAGAAGGTTACCAGCAAATCCTGCAAACCACCAGAATTGGCGAGTAATGCAGAAGGTCACCTAGTGTGGATTCAAGTGCACCAATCCAGAATGTCTAACATTATTAGTTCTTTACGGCCCAGCGTCGACCCCTTATCTCATAGCCATCAGATGCCAAATCACCACCTCCCCAACTGTCCGCAGCAGCAACCGTGCTTACAGCTCTCCGATGTTTTTTGCCCTTCGTGAACCCACTATCACTTGTGCTACCACCTAACAGAGGATCATCAATTCCACGAACCGGTCTATCTGGTGACACTGCACTCACCCAGTTGTCATCCTGGCTTTTCTTGTTCTTTTTCATCAATTTGTCAAACCGCTTCTCGACTGGCCGTACAGCTTGGTTAACAGTGAATTTAAAATCCTTGATCACATATTCCCCACTGCCAACCACGAAGTCTCGAACACTTTCTTTTATGTTTGTTGTGCTTCTCTCATCTGGTTCCAACTGCGGAAGCTTCAATTTGGCGGGTCTGTTACTTTCCTTTATTTCAAAAGGATCTACAGGGTCCGAGGATACATAATCCCCGAGTACTGAGACGTTTCCTGGTGACTGGTTGGCTTGCAGCTCATAGGGCTTCGCAGGGAACACATAGAGGTGAACAATGGAAGCAATGCCCATCTCTATGCAGATAATGAAATCTTGAATGCTCGATTTCAACTCCAAGCTCTGGGCTAAAGGACTTCTAAGTAGGCCCAAAGAATACATTATTGCAATTACCACCCCTTGCCACCATGTCAAGAATACTATTGATTTGAAAGAAAGAAACTTAGCCAGAGGCTTTATATGTGCCAATTCATCCTTGGTAGCCGTATACCATTCTACTAAACAGTACAGGGCCCAATATTGACTAAAGTTCAGGACTGCAGCAAAATAAGGGTATCCACATCGCAAATTGAACTCTCCATCACAATATACACCAAAAGCTTCTAGAAAAAGAGATAAGCTAGCCGTGACTGTCTTTATAATCACATATTGGAAGATTCCAAATTTGATAATCAGGTAAAAACGCATCCCCAATCTCCAGGGTTTCAATATGAAGTTCACAGGAAAATGATGATGTATGATTCCCTTCTCAGAGGCATGATCCAAGAGGGGTTGCCTGGAACCAGAGCCTCCTTCCCTCTTTAAAAAAGCTATTGTTTTATCCTCCCCACCTAAACATGCAGTAATATACCTTCCGAAGCAGTACATAGCAAATGCTTCATAACCATCACGCAAGATGCCACAGTAAACACTGGTATTTGGATTTATCAACGAAACATACGACTCAATTGCATAACATGGGACCATCAAGATAACACCGAGAACAAACTTTTGTTCCTCTGGATTATTGTACGCTGAGAGGTGCTCAAATATAAGGTATATAGAGAGGGAAAGAGAGAGCAGCACGAAGAATCCCGCAACCAGAGTGGCCCAAGTTGGCGTGGTGTATTGCGCCAACAGGGGCATGAGCAGCCTAAGATTGACCCTCATGGTTGTGCAAAAATTTTCTTCCAATTCCTATGGTCTCACAAGACCTCAGAAATCAGCATAATTCAAAATGAAATTCTGCACAGTTGCGGGCATCTCCATATGCATAGCAGCTGTTGAACTCAATACCTGAATAAGCACACGTGAGGCCACGAGCGGCGAAGGCGGCCAATCTACGGCGGCTTCCGGCCGACGGCGGCGCCTCCGCGCGTGATTTCCCGCGGGACGTCGGCGAGGGAGAAGAGGGAGAGAGGAGGAGTCGTCGTGGTCGTGGCTGCTCGCCTCGCCTGCCCCGTGGC

Explanation	CPC Score
noncoding	-1.11717

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0276000.2	4	28193327	A	G
Osa04LNT0276000.2	4	28194632	A	G
Osa04LNT0276000.2	4	28195339	G	A
Osa04LNT0276000.2	4	28192939	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0276000.2	osa-miR5818	Cleavage	5.0	13.212	1	21
Osa04LNT0276000.2	osa-miR1440b	Cleavage	3.5	14.426	1	21
Osa04LNT0276000.2	osa-miR169a	Cleavage	4.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169b	Cleavage	4.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169c	Cleavage	4.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169d	Cleavage	4.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169e	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169f.1	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169g	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169h	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169i-5p.1	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169j	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169k	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169l	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169m	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR169r-5p	Cleavage	5.0	14.57	1	21
Osa04LNT0276000.2	osa-miR1850.1	Translation	5.0	16.262	1	21
Osa04LNT0276000.2	osa-miR3981-3p	Translation	5.0	18.584	1	21
Osa04LNT0276000.2	osa-miR2873b	Cleavage	4.5	17.599	1	21
Osa04LNT0276000.2	osa-miR5522	Cleavage	5.0	16.072	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0276000.2	4	nan	Morphological trait	Root	RM3288	RM5503
Osa04LNT0276000.2	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0276000.2	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0276000.2	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590
Osa04LNT0276000.2	4	qCTS4-3	Resistance or Tolerance	Cold tolerance	RM241	RM317
Osa04LNT0276000.2	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus