>Osa04LNT0276300.2

TTATCACAGCACCATAAACTCGCACATAGAGCTATAAAAAGTGCCTGTATGACATAGGGTGTCCCATCACATCATAACTGTGGACAATGCAGGTGAAAACAAAAAATAGTCGCACAAAAGAAAGAATACAGTACACCACTGCAGCCTGTTGACAGGCTTATAACTGGATTAAATGCAAATTTAACAACACAGAGACCAAGCATATAGTGTTTTATCTAATTAACCAAAACAGGTGAGAGTGAGTGAACAAGAGCACCCTTCCGTTCGCTAGTAAGGAAATACTCACTAAACTAGCTTGATTTACAACATGCCATCAGGAATTCTGGACCCTATATCAATTGTATGTCCTTTCTGATACAATGAGCACAATTACTCTCCTGCATCCATAAGAACTGTGAACAACTCGCATGAGTGAATCACCTCACTTGCAGTATCGGTCGGCCTTCTTGCGCACGCGGTCGTCGAGGGCCTCCTCCACGGTGCGGCTGCGGGAGGCCTTGGCGGCGTTGGCGGGGTCGTACCCGAACTTCTTCGACTCCACGGGGAATAGATCCTCGTACTTCATCCGCTTCGCCGCGTCGATGGTGTACTCGTCGCCGCCGCCCTCGGCGGCGCCCTCCGCGGAGGGCGCCGCTGCGCCTTCCGCGTCGGCTTCGGCGTCGGCGGGGGCGTCGGAGGCGGGCTTCTTGTTCTTCTTGTGCTTCTTCGGCGGCTTGTGGAGGGAGGCGGCCTCGCCGCCCTT

Explanation	CPC Score
noncoding	-1.13345

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0276300.2	4	28375649	G	A
Osa04LNT0276300.2	4	28376342	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0276300.2	osa-miR319a-3p.2-3p	Cleavage	4.5	19.345	1	20
Osa04LNT0276300.2	osa-miR319b	Cleavage	4.5	19.345	1	20
Osa04LNT0276300.2	osa-miR1877	Cleavage	5.0	15.754	1	24
Osa04LNT0276300.2	osa-miR5147	Cleavage	4.5	10.752	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0276300.2	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590
Osa04LNT0276300.2	4	qCTS4-3	Resistance or Tolerance	Cold tolerance	RM241	RM317
Osa04LNT0276300.2	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0276300.2	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0276300.2	4	nan	Morphological trait	Root	RM3288	RM5503
Osa04LNT0276300.2	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus