© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0276400.1
ACTCAATCACAGCTTTGATTTACCAGGCCATGTCTCAGATTACAGCTATACAATAGTAACATGCATTCCCAGTCACGTCAATTTTTTTTTCCTTTTAATTGGATGTTTGAAGTTCATTCCTAGCCTCGTATTTTCCACAAAACCACTATTCTATCAAGTGAAAACTCCATACAATGCTCAAACTCTAAAGATCACTATTACTTCAGGAAAGTTCATACAAGGAACTACTGTCTTCAGGTAAGTTCATGCTCTGCGATGGTAGCAGACTAGCAGTGTGTTCCTCCTGTGTCACCGAGGGTGCAAAATGTGAACTGATTGAGCAGACCAAAGGGATGCACCTCTTCTTACTAGCAGTACAATCAAAGGCAGAACATGCTGTCATCAAATTGTTGTAAAAGGCAAGCTAGCCACAGAAGATAAAGGGGATACTTGAGCTTTGGTTAAAAACGATTTCCCATTAGAAATAGAAGCAGCCCATATCTTTGTTGATCATCAAGGAATGATACTCATTGTAGTTAAGATACCCCCAGAAACGATAAAGACCAATCTCCCCATATTTCGAAGACTTCAAATGCAAAATATACAAATCTTTGATATTACCCTCAAACTTCGTTCTAATAGCGTCCACCTGAGAGAAATTTATAAGAGAATCCAGATTAAGTTGTTTTACTGTTGACTCAGAAATGTAATTGAGGCTCTTAAAACATGACCGCAACTCCAAAGCTTGTTGTAGAATGCTATTAATTATGGCAGCAATTGGTTTTGTTTCAGCAGATAAGAAACATATGTGAAGCGCATCAGTAACATAACATAGATGCACATACTCGAGATCCAGCATATCTCTCACCTGATGTTGAAGTGAATGTTGAAAACGGCGCCATGATATATCAGACAAATGGCAATGGAGATACTGTTGTAGTGTTGATAGAAAGTGATAAACTTGATGTCTCAGTTTCATCACAGAACTCAATTCCTTTAAAACATCAGGTCTATTATGGCTGGAACGACTGATTAACTGTGTTAACTCCTTCAGAAATCGCCACACTTCAGTCAGAGAAAACACTGCAAGCCTAACCTGAACAAGATACCGAAATATTTCAGCATATGTTTTAAGTGCCTCCTCTGTAATGACGATGTTCACTGGCCAATCAACTTTATAGCCCAATAAGATGTCGTCCAGCACATCAAGACCACATGTAGAGGCTTTAAGAGAAACAACTGGTTGCTCATTCATATATACAAACAACCTTTCCTTATAAGGGTCAGAATCGCATGAAGACCTCTGCAAAGCCAAGTCAAGAAGCCCTTGGATCTCTGCTCTTTTGTGCTCAGACTTGACAAAGGACCACTTCTTTTTATAAATAGAAACAATAAAAGAATCTGCCCAATCAGCCAGTTCCATAAAATGGTAACGCCGCAGTGCTTGTAAGTGTCCACAAAGATCAAAACCATCCTCAAGCAACTTCATCGTGAAGCTGCTTACATATTTATATTGCAGCAAAACTTCTTGTATAATGCACTTGTCAATAGCTATATCAAGTGGCATATCAGATGATGAAGTGGTATCTCCAGCTATTTCCATTGATTTAGCAGTGTACTCTAATGATTTCTCCCAGAATGCCCCACCCGAAGGATTTTCTAGAAGATTTGTTTGTGCTGAGATGTCTCCTGGGGAAGTAAGATAAGCATGACTTGTTGTCTTCGATTGAAGAAGCTTGCTGGAACAATCAAACTGTTTAGAAGCCTGAGCATTGGACTGTACAGCCATTGCAGATCTGACTTCAAACTCATCAAGGGAAGAAGTACTTCTCCCACAATATGCTTCACATGGATTAGTTACTGACTCAAAATTAAAGCCAATAAGTGCTTGGTTCTTCCTATTTCCATGCAAGTCATGCTCCGTATGACAAGAAACCGCATTCTTCACTATTGGATTAATGCTAAAATTGTAAGGAATGTTAGTATTCCATGGTTGCTTTATATTGATAGATTTTTCATCGTTATCCCTATTTGGCAGTCTAGGAGACCCTGATTCAGAGTGTCGACAAACAACATTGGCATGTGATACTTGCTCTGCACCTTTATCTCCTGTATATAAGAACTCTTCAGCCAAACTCATTTTTCCAGAGGATATATCGAATGAATTCTTCAAGAAACTGTCGAATGGCCAAAATTCACTGTATTGATTGTCCAGTTCCAAAGCATCACAGACCACGTCATGTTCTATACTCTGCGAGTGCATAGGAACATGTCCATAACTCAAGTCGTCCTTTTTCTTGTTCTCATTGATAGGGCTAGCAGGATTAATCCCATCAGAAACAGAACAGGTTTCATATGAAAGTAACTTTGTGGTTACAGATGAGCATTTTGCTTCACCTGAACTTGCACGGTACGATGAGAACATCGAGCTAGGCATATTATCACAAGCAGTATCAATCTCATCTTCAATATCATCAATAGAACTATATGATGAAGATGATTCCGATGATTCTAATGCATCCACTTTATCTGAAGATTCTTGTGATGTTGAAGAAGCATCATTATCTTTAAGCTCTGCAACCACATTGCAAGCTGGTAGAGCATTTGTGCCATGATAGAACAGCTCCACATCTGAAACAGCTGTATCTAGAGGGCTTGTACTTATATGCAGAACATTCAGTGCCGCATCAAAAGGAATTACCTCAACATTTGAGAAAAAGTGATGGAGCTTCTCTATCATTGACTTGTACATAGCATCTCTTTGACATATTACTGCTTCCACCCTACTTTTTGAGAAAGTGAATGAATTCATTGAAGACTCGATGGACGTATCAAACCATGGGAGAATTTCCTCCAGATGAATGATGTGACGAGATGCATGAGCATCTCCTCCAGTGTCAGAAAGATTACACGATTCTAGAAGCTTCATGAGCACTTGAAGTTGTTGTCCAGTGCGCAGAAGAGGACCACATACATCTTTTAGAAAGCATGGTGCAGATACATGATTTGCTCCCTTTAAGGACAACAGGGTGAAATTATCTACTGGGTCTGAAGAACCTCCTTGAGTTCGCTTATTCTTAGCTTGAGTTATGAGAAATTCCTCATAAGGATCATCAACAGAAGCTCGGTAAATCCAGGACTTGATGAAATTACAATATGGCTCACAAGAACGAACAAAAAGATATTTTAGAAGTCCATAGTGAACGGAATCGGCATCACGAAGATGGACATACAAATAGGAAAGCAAATCAGTGCTCCATGGGAAGTTCTCAAACCCCAAGTTAGAATCAGTTGTCAAACCCTCCTGGCACAACGAAAGACCTGCAAACTTCGGAAAGCATATATTTCCGAGGGACTTAATATGTCTTCTTAACTCCTCAGTGTGGAGATAAACTTCCAGAAGAGTGATTTCAGAATTAGAATTATAACTAGCTCCATCTGGGGTCATGGAAGGTATATCAGGTTGTCCCTCCAAACGCCTCAGCTTAATTGATGCTGGTAGAGTATTCAAGGAACAAAAATAACCTTCTAAAACCTTTTCAACTGCTGCAGCAAATGCTTGGTTCACTAAACTGTAAGGAGCAGGTTGTTCAGTTTCTTCGCTATCAGAAACTTCATGTTCATGTCCTTCTCTACCTCGACCATTCAATTCTCGACTTTGGAAAAGATAAAAATGCAGAAACTTGCACAGGAAGAGAACTGAAAGACCTGTAGTGCGTATAGATTTGAGAATATTCCCTACAGAGGTAGTACTGGATGAACGTGACCACACGTTTGCAACACGATGAGAAGTCCTATCAGCCGGACATGAGAAGAACAGCACAGAGAGCTCCTCAATCTCATCTAATGATGATTTGACACCATGCAGTGCATGCAAAGCCAAACGAACCAAAGAAGCATCCGGAACCGATGCGAGCTCGTAGATCGGATCCCCCCGGAGCCGCCCTCCAGGGTTGGCGGTACGGGCGGCACCGCCAGCCTGGGTGACGGACTCCCAGGTTGCCGGCGGCGTCCACGGGCCGACCACTCGGAGGGTGGCGAGCAGCGACGAGAGGCTGGAGGCCGCGGCCTCCATCCGGGGAACGGTAGTCAGCTAGGGTTTAGACCTCCAATGTCAGGCCTTATTCCGAACGCAATGAGAGGAGGAGCGGTGTTGTGCTGGTTGCAGCGAGCGGCAGTGAGGTACGGATCGCCGGAGACGTGGTGGCTGGCTGGCTGGCTCCGGCGAGAGGGTGGGAGTGGGAGGGAGGTCGCCGTCGCCGTCACCGTCACCTGCCCGCGGTTTCGGAGAGAGCCGGCGGGAATTGAGCCGCGAGGGGAGCAGTCCGCAGGTGAGAGGGTGAGA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0276400.1 | 4 | 28486916 | A | G |
| Osa04LNT0276400.1 | 4 | 28487544 | T | C |
| Osa04LNT0276400.1 | 4 | 28486682 | T | C |
| Osa04LNT0276400.1 | 4 | 28486435 | T | C |
| Osa04LNT0276400.1 | 4 | 28484198 | C | T |
| Osa04LNT0276400.1 | 4 | 28486636 | A | G |
| Osa04LNT0276400.1 | 4 | 28486797 | A | G |
| Osa04LNT0276400.1 | 4 | 28487107 | G | C |
| Osa04LNT0276400.1 | 4 | 28487668 | T | C |
| Osa04LNT0276400.1 | 4 | 28488200 | A | T |
| Osa04LNT0276400.1 | 4 | 28488741 | G | C |
| Osa04LNT0276400.1 | 4 | 28490303 | G | A |
| Osa04LNT0276400.1 | 4 | 28491650 | T | A |
| Osa04LNT0276400.1 | 4 | 28491705 | A | T |
| Osa04LNT0276400.1 | 4 | 28492179 | A | C |
| Osa04LNT0276400.1 | 4 | 28492444 | G | C |
| Osa04LNT0276400.1 | 4 | 28494128 | T | G |
| Osa04LNT0276400.1 | 4 | 28494263 | A | C |
| Osa04LNT0276400.1 | 4 | 28486672 | T | C |
| Osa04LNT0276400.1 | 4 | 28492160 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0276400.1 | osa-miR5537 | Translation | 4.5 | 16.649 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR5538 | Translation | 5.0 | 13.185 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR5804 | Translation | 4.5 | 15.137 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR5817 | Translation | 4.0 | 7.942 | 1 | 24 |
| Osa04LNT0276400.1 | osa-miR1861o | Translation | 4.0 | 12.904 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR395c | Cleavage | 4.0 | 20.442 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR395u | Cleavage | 5.0 | 20.442 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR395u | Translation | 4.5 | 16.437 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR396a-5p | Translation | 4.5 | 13.628 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR396a-3p | Cleavage | 4.5 | 13.941 | 1 | 20 |
| Osa04LNT0276400.1 | osa-miR396b-5p | Translation | 4.5 | 13.628 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR396b-3p | Cleavage | 4.5 | 13.941 | 1 | 20 |
| Osa04LNT0276400.1 | osa-miR396c-3p | Cleavage | 4.5 | 13.941 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR167d-3p | Cleavage | 5.0 | 21.394 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR167h-3p | Translation | 4.0 | 14.019 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR417 | Cleavage | 5.0 | 12.593 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR426 | Cleavage | 3.0 | 20.105 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR535-5p | Cleavage | 4.0 | 14.472 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR395o | Cleavage | 4.0 | 20.442 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR810a | Translation | 5.0 | 22.594 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR815a | Cleavage | 4.5 | 7.817 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR815b | Cleavage | 4.5 | 7.817 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR815c | Cleavage | 4.5 | 7.817 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR1438 | Cleavage | 5.0 | 21.144 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR1861a | Translation | 4.0 | 12.904 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR1861b | Translation | 5.0 | 12.904 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR1861d | Translation | 4.5 | 12.904 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR1861f | Translation | 5.0 | 12.904 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR1861i | Translation | 5.0 | 12.904 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR1861l | Translation | 5.0 | 12.904 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR1878 | Cleavage | 4.0 | 10.299 | 1 | 24 |
| Osa04LNT0276400.1 | osa-miR2090 | Cleavage | 5.0 | 15.731 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR2101-3p | Translation | 5.0 | 12.117 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR2122 | Cleavage | 4.0 | 12.664 | 1 | 22 |
| Osa04LNT0276400.1 | osa-miR2922 | Translation | 5.0 | 17.756 | 1 | 20 |
| Osa04LNT0276400.1 | osa-miR426 | Translation | 5.0 | 10.647 | 1 | 21 |
| Osa04LNT0276400.1 | osa-miR393b-3p | Translation | 4.0 | 14.552 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0276400.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0276400.1 | 4 | qCTS4-3 | Resistance or Tolerance | Cold tolerance | RM241 | RM317 |
| Osa04LNT0276400.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0276400.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0276400.1 | 4 | nan | Morphological trait | Root | RM3288 | RM5503 |
| Osa04LNT0276400.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)