>Osa04LNT0276800.1

CCGTCGCCGACCCGGGGGATCGCCGTCGATGGCGAGTTCCCCGCCCTAGTTTGCCGCTCCACCCTACCTTCTCCCCCGGCTGCATTGGGTGGCCATGCTCGCCCTCCACCTCACCGCTCCTGCGCGCCGCTCCCCCGTTGCTTCCTCGCCGCTGCCCTATTCCCCTATCGCTCTTACCGCATCCGGATTAACATGCGTATGTGCTACTGCTTGTATCTTACACGAGGGCTACTGCTGGGGCCTCTCGTGGGGCTTTGATTCAGAGGGCGGTGTTCGCCGCTCATGACCTTGGCCATGTGAGGTATGGTGAGCAAACATGAACGCGACGCATTTGAGCGGGATATTGGGATGCATACTTTCTGTCGGTGCACTCAACAAGGTGATGTTAAGATGTTTACTTCCAGTTTTTTTTCCTCTTCTATTGATACCTTTACTGGTTGTATTATGATTTGTTCGGTACCGCAAAAAGTTCCAGTTAGAAACAGGCTTCCCACAGAGTAGCTGAAACTTCTGTCATACAAACGTCAAAGAGAAAAAACTTCTATCATATAGTACTATTTGTTGTTCCCCTTCTTTTGGTTTGAAGTGTTTGAAATCACTCTTTCCATTTTGTAGAGCAGAAACATTTTACTTTGACACCACCCTCAAATGCAACTTCGACCACAAATTTATATTGCAATGTACTATGAGTATAAGGTATGGTAGTACTTGACAAATCTACATATATCTTTATGTCTTCAATAAAAACACCGAGACAAACACATATCCTGAATTGCCACTCTTGTGTGACTGTAGAGGTATCTAAGATTGAATGGTTATGGGTATGGAAGTTGGGATATGCATATAGTTTATTAGACTTGAGATAACCAACAAACTGTTTATATG

Explanation	CPC Score
noncoding	-1.22321

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0276800.1	4	29453233	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0276800.1	4	nan	Morphological trait	Panicle/flower	RM303	RM255
Osa04LNT0276800.1	4	qCTS4-3	Resistance or Tolerance	Cold tolerance	RM241	RM317
Osa04LNT0276800.1	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0276800.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0276800.1	4	nan	Morphological trait	Root	RM3288	RM5503
Osa04LNT0276800.1	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590
Osa04LNT0276800.1	4	nan	Morphological trait	Panicle/flower	RM303	RM348

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus