>Osa04LNT0277200.1

CTCCTACTAATAACCAGCGCTGATCTTCCTTTCCATCCGTCTCTATACATCATCGATCACCGATATTAGGGAGGCGCTAACAAACACCACCAAAAGAGCAAAGGGGGTTTAAACAAAAACACAAACCCATATGTAACTTTGTAAGTGATAGTTTTCTGGTGGTAAGGTGTGAGGATCATCTGGTCTTGGCTTGCCGGAAAACGAGCAGCACAATCCCGGAGGAGTTTCCTCACTTTCAGTCCCTCCTCCTTGTCAGTTGTCACCCGGCGAGGATCGAGCCGGCGCGAGCTTTCGGAGGCCTCGGAGTGGACTCCACCTCTCTGGGGTCGGGAGTACGTGGCGCCACCTTCTTGGAGATGTTCTTCTTCTCCTTCCTCTCCATCTCGTCGTCCATTTCGATCTGCTCCCTCCTGCACTCCTCGCTGCAGAACGGAATGTCCCCCCTGTACATGTAGATATCGCGGTTGCTGGCGAGCGGCTTCCGGCAGAGGAAGCAGGCCTCCAGGAAGTGCCCGTACGGCAGCAGCCCACCCGCTCCATCTCCGGGGGGAGGGGAAATCTTCCGCGGCTTGTGGTTATTCGATTCGGTGGCGCACTCGATCTCCTCCTCCTCGTCGTCGTGTTGGATTTGGGCCCGTCGCGAGGCGCGGGCACGGGGAAGTGTTCGTGCTGCTGCGTTT

Explanation	CPC Score
noncoding	-1.16455

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0277200.1	4	29589713	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0277200.1	osa-miR5793	Cleavage	4.5	19.34	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0277200.1	4	qCTS4-3	Resistance or Tolerance	Cold tolerance	RM241	RM317
Osa04LNT0277200.1	4	nan	Morphological trait	Panicle/flower	RM303	RM348
Osa04LNT0277200.1	4	nan	Morphological trait	Panicle/flower	RM303	RM255
Osa04LNT0277200.1	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0277200.1	4	nan	Morphological trait	Root	RM3288	RM5503
Osa04LNT0277200.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0277200.1	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus